View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-10 (Length: 540)
Name: NF1809R-Insertion-10
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Original strand, 17745701 - 17746213
Alignment:
| Q |
9 |
tttactccaaggtgaagaggttcctttctgttgctgataaaggggtggattgaatcagcaaaaggatcctttacttccttgttgttcaagtatgaagaga |
108 |
Q |
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| T |
17745701 |
tttactccaaggtgaagaggttcctttctgttgctgataaaggggtggattgaatcagcaaaaggatcctttacttccttgttgttcaagtatgaagaga |
17745800 |
T |
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| Q |
109 |
aagaaccaccacgaaggttattgttgttattctgagaggtgaaagtggttgctgagataaccatggttaaaaggatttgagaaataaagaaaagtggtaa |
208 |
Q |
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| T |
17745801 |
aagaaccaccacgaaggttattgttgttattctgagaggtgaaagtggttgctgagataaccatggttaaaaggatttgagaaataaagaaaagtggtaa |
17745900 |
T |
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| Q |
209 |
agacaaagatgctataacactttgagaaatgaagtaaaagtagtaatattatgatgactttttggagtgcaaaagggtcagatgaattggaaaggttctt |
308 |
Q |
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| T |
17745901 |
agacaaagatgctataacactttgagaaatgaagtaaaagtagtaatattatgatgactttttcgagtgcaaaagggtcagatgaattggaaaggttctt |
17746000 |
T |
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| Q |
309 |
aaaggaaaacccaattatgtgaaggaaaagactaaagctagatagaaaagaaaggaagtagatgcaagagagggttttaaatgagtagcatatttaagag |
408 |
Q |
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| T |
17746001 |
aaaggaaaacacaattatgtgaaggaaaagactaaagctagatagaaaagaaaggaagtagatgcaagagagggttttaaatgagtagcatatttaagag |
17746100 |
T |
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| Q |
409 |
tagctctataagtaggctaatggaagatgcaaaatgtcaagtaagtaggaccatatgcttgtagcttaattgacaattcaccaataatgtttacaaggaa |
508 |
Q |
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| T |
17746101 |
tagctctataagtaggctaatggaagatgcaaaatgtcaagtaagtaggaccatatgcttgtagcttaattgacaattcaccaataatgtttacaaggaa |
17746200 |
T |
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| Q |
509 |
attccgagttgat |
521 |
Q |
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| T |
17746201 |
attccgagttgat |
17746213 |
T |
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