View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-11 (Length: 520)
Name: NF1809R-Insertion-11
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Original strand, 28332853 - 28333364
Alignment:
| Q |
9 |
tttagttcagttagtcagattacttgatttgcaagtaactatgagattacttgattagcttgttgattaggagaagtgtaacactatatatacttcttgt |
108 |
Q |
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| T |
28332853 |
tttagttcagttaatcagattacttgatttgcaagtaactatgagattacttgattagcttgttgattaggagaagtgtaacactatatatacttcttgt |
28332952 |
T |
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| Q |
109 |
acatgttgattcaactatgagaaatgagaatgattcgttttgcacatttcataacataattgtcatagacagatctgaaatttctttgggagagaagaag |
208 |
Q |
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| T |
28332953 |
acatgttgattcaactatgagaaatgagaattattcgttttgcacatttcataacataattgtcatagacagatctgaaatttctttgggagagaagaag |
28333052 |
T |
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| Q |
209 |
tcataactagttcttaacttgtcgtgcttcctcgcattgaaggtataatgannnnnnnattgaagctgagagttattgcgtaaactcgaatccagtattt |
308 |
Q |
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| T |
28333053 |
tcataactagttcttaacttgtcgtgcttcctcgcattgaaggtataatgatttttttattgaagctgagagttattgagtaaacttgaatccagtattt |
28333152 |
T |
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| Q |
309 |
ctgaaacgtttcctatgtctaatgactgatacaagacattactagccccgatagttcagtatgtatctacctacttttcagctaggaatttttgctttgc |
408 |
Q |
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| T |
28333153 |
ttgaaacgtttcctatgtctaatgactaatacaagacattactagccccgatagttcagtatgtatctacctacttttcagctaggaatttttgctttgc |
28333252 |
T |
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| Q |
409 |
gaggggcgtcattaggtcagaagcttcatatagatggtaatgcaaggtggtttgaagacagatnnnnnnncagctgaatctgaattgtaacttatgagat |
508 |
Q |
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| T |
28333253 |
gagggtcgtcattaggtcagaagcttcatatagatggtaatgcaaggtggtttgaagacagataaaaaaacagctgaatctgaattgtaacttatgagat |
28333352 |
T |
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| Q |
509 |
agtgctgattcc |
520 |
Q |
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| T |
28333353 |
agtgctgattcc |
28333364 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 25191255 - 25191211
Alignment:
| Q |
93 |
tatatatacttcttgtacatgttgattcaactatgagaaatgaga |
137 |
Q |
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| T |
25191255 |
tatatatactacttgtacatgttgaatcatctatgagaaatgaga |
25191211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 1063694 - 1063740
Alignment:
| Q |
425 |
tcagaagcttcatatagatggtaatgcaaggtggtttgaagacagat |
471 |
Q |
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| T |
1063694 |
tcagaagcttcatgtagatggtaatggaatgtggtttgaaggcagat |
1063740 |
T |
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