View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-12 (Length: 460)
Name: NF1809R-Insertion-12
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 205 - 460
Target Start/End: Original strand, 28266343 - 28266597
Alignment:
| Q |
205 |
gagggagtactatttaaaagtgaataattatctctttacaaggtaaaagaatagagttgggctccacaannnnnnnnccttccatctctataagagattc |
304 |
Q |
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| T |
28266343 |
gagggagtaatatttaaaagtgaataattatctctttacaaggtaaaagaatagagttgggctccacaaatttttt-ccttccatctctataagagattc |
28266441 |
T |
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| Q |
305 |
aaacaatgaaaagtgtctttttcaatcaagtttatttcccattttttcttactttctttccatcaccataatggtcaaaaatagttacttgatcatgtta |
404 |
Q |
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| T |
28266442 |
aaacaatgaaaagtgtctttttcaattaagtttatttcccattttttcttactttctttccatcaccatgatggtcaaaaatagttacttgatcatgtta |
28266541 |
T |
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| Q |
405 |
gatggaccctttcaacatagtatggaactggattggtcctttttgaatccatactt |
460 |
Q |
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| T |
28266542 |
gatggaccctttcaacatagtatggaagtggattggtcctttttgaatccatactt |
28266597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 28266138 - 28266252
Alignment:
| Q |
9 |
gatgttaggaatgaat--ggaggtatatttttgggttagtcactatatgtttttaaaattcctcctacttgtattgaacaattttttattaacgacagtc |
106 |
Q |
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| T |
28266138 |
gatgttaggaatgaatatggcggtatgtttttgggttagtcacaat--gtttttaaaattcctcctacttgtattgaacaattttttattaatgaca-tc |
28266234 |
T |
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| Q |
107 |
agttaaatttgttacgtt |
124 |
Q |
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| T |
28266235 |
agttaaatttgtttcgtt |
28266252 |
T |
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