View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809R-Insertion-13 (Length: 455)
Name: NF1809R-Insertion-13
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 289625 - 289391
Alignment:
| Q |
8 |
atgtttatgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaact |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
289625 |
atgtctatgactagattcacttcctaccttaaaatggttttttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaact |
289526 |
T |
|
| Q |
108 |
tgatggttggtttcttaa-gaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatttatttgtactcct |
206 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
289525 |
tgatggttggtttcttaaagaaatataatggttggttaacagttttattctgcattaattgtgcatttcagtttatctcatcatatttatttgtactcct |
289426 |
T |
|
| Q |
207 |
aagtattgtcttattgaacttgctatacattatta |
241 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
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| T |
289425 |
aaatattgtcttattgaacttgctatacattatta |
289391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 351 - 455
Target Start/End: Complemental strand, 289281 - 289177
Alignment:
| Q |
351 |
catgtcgttgcattttaatggatttaaacccgctaccggtcccaactaatcagaatgaaatattttataagcaaagccatgccatcattgtcattacact |
450 |
Q |
| |
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|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
289281 |
catgtcgttgcattttaatggatttaaacccgtcactgctcccaactaatcagaatgaaatattttataagcaaagccatgccattattgtcattacact |
289182 |
T |
|
| Q |
451 |
ttatc |
455 |
Q |
| |
|
||||| |
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|
| T |
289181 |
ttatc |
289177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 24531354 - 24531129
Alignment:
| Q |
14 |
atgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatgg |
113 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||| |||||| |
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| T |
24531354 |
atgattagattcacttcctaccttaaaatggttttttggttgaggttttcttacttaaaaatattggttggctgtgaattgtcgttttctaacatgatgg |
24531255 |
T |
|
| Q |
114 |
ttggtttcttaagaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatt-tatttgtactcctaagtat |
212 |
Q |
| |
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||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||| ||| |
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|
| T |
24531254 |
ttggttttgtaaaaaatttaatggttggttaacagttttattctgcattaattgtgcactagagtttagctcatcatattatatttgtactcctaaatat |
24531155 |
T |
|
| Q |
213 |
tgtcttattgaacttgctatacatta |
238 |
Q |
| |
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|||| |||||||||| |||||||||| |
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|
| T |
24531154 |
tgtcctattgaactttctatacatta |
24531129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 24523929 - 24523704
Alignment:
| Q |
14 |
atgactagattcacttcctaccttaaaatggttctttggttgaggttttcttacttaaaaatatcggttggttgtgaattgttgtttcctaacttgatgg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||| |
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|
| T |
24523929 |
atgattagattcacttcctaccttaaaatgattttttggttgaggttttcttacttaaaaatattggttggttgtgaattgtcgttttctaacatgatgg |
24523830 |
T |
|
| Q |
114 |
ttggtttcttaagaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatt-tatttgtactcctaagtat |
212 |
Q |
| |
|
||||||| ||| |||| |||| |||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||| ||| |
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|
| T |
24523829 |
ttggttttgtaaaaaatttaatagttggttaacagttttattctgcattaactgtgcactagagtttagctcatcatattatatttgtactcctaaatat |
24523730 |
T |
|
| Q |
213 |
tgtcttattgaacttgctatacatta |
238 |
Q |
| |
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|||| ||||| ||| |||||||||| |
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|
| T |
24523729 |
tgtcctattgccctttctatacatta |
24523704 |
T |
|
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