View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-14 (Length: 450)
Name: NF1809R-Insertion-14
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 33824861 - 33824418
Alignment:
| Q |
7 |
caaaaagaagtaaatgatagaaggtgagagagggagggaaaatggacagaagnnnnnnnnnctagtactagatccatattcatataccacccaaaccaaa |
106 |
Q |
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| T |
33824861 |
caaaaagaagtaaatgatagaaggtgagagagggagggaaaatggacagaagaaaaaaaaactagtactagatccatattcatataccacccaaaccaaa |
33824762 |
T |
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| Q |
107 |
accaaacacacnnnnnnnnntacaaactctaagatagaattaaggagcaaaacctatgctactatgtaatggtaaaagaagatttgaccggtcaacaaaa |
206 |
Q |
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| T |
33824761 |
accaaacacacacaaaaaaatacaaactctaagatagaattaaggagcaaaacctatgctactatgtaatggtaaaagaagatttgaccggtcaacaaaa |
33824662 |
T |
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| Q |
207 |
gaaaaagaacacgtagttacacttattactgatattgggtttgaattgcaccattggtagttggaagatcagaccaagtaagggttggaattggattcca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824661 |
gaaaaagaacacgtagttacacttattactgatattgggtttgaattgcaccattggtagttggaagatcagaccaagtaagggttggaattggattcca |
33824562 |
T |
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| Q |
307 |
gtaccctaattcaccaccagtaactgaagttgtctccaaaatgttggatatagacgaagaatttgaagccgcgttccctagtaataccgttggtgaagat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824561 |
gtaccctaattcaccaccagtaactgaagttgtctccaaaatgttggatatagacgaagaatttgaagccgcgttccctagtaataccgttggtgaagat |
33824462 |
T |
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| Q |
407 |
gaaatatcaccaacactgttactagggaaagttgttgatgacct |
450 |
Q |
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| T |
33824461 |
gaaatatcaccaacactgttactagggaaagttgttgatgacct |
33824418 |
T |
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