View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809R-Insertion-19 (Length: 327)

Name: NF1809R-Insertion-19
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809R-Insertion-19
NF1809R-Insertion-19
[»] chr1 (3 HSPs)
chr1 (9-327)||(18344936-18345254)
chr1 (66-319)||(18339786-18340039)
chr1 (66-274)||(18303657-18303865)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 18345254 - 18344936
Alignment:
Q  9 ctactataccctagctatattgagattctctcagaggcagaaaatctcaatatacgatataatgctcgtggagagaatgtaatgatgccggaggttccat 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18345254 ctactgtaccctagctatattgagattctctcagaggcagaaaatctcaatatacggtataatgctcgtggagagaatgtaatgatgccggaggttccat 18345155  T
Q  109 ttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatgttgtgttgagagatcaaaagctatggaacaagtttcagattcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18345154 ttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaaggttgtgttgagagatcaaaagctatggaacaagtttcagattcc 18345055  T
Q  209 atgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatcaatggaggatttgaaggggtatactggttttacactgactaga 308  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18345054 atgtacaaataagtattattgttatccagaggagcattatttttcgactcttctatcaatggaggatttgaaggggtgtactggttttacactgactaga 18344955  T
Q  309 gttaattggaccggtgctg 327  Q
    |||||||||||||||||||    
T  18344954 gttaattggaccggtgctg 18344936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 66 - 319
Target Start/End: Complemental strand, 18340039 - 18339786
Alignment:
Q  66 tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg 165  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||| ||| |||| |    
T  18340039 tataacgctcgtggagagaatgttatgttgccggaggttccatttgaggattttcgggttggttcgcagttttttatcttgaataggaagcatgcaaagg 18339940  T
Q  166 ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc 265  Q
    ||||| |||||||| | ||||||||||| ||||||| |||||| |||  ||||  | ||| |||||| ||||| |||||||||||| | |||||| | ||    
T  18339939 ttgtggtgagagattataagctatggaagaagtttcggattccttgtgtaaatttggattcttgttatccagaagagcattattttcccactcttttgtc 18339840  T
Q  266 aatggaggatttgaaggggtatactggttttacactgactagagttaattggac 319  Q
     ||||||||| |||| |||| |||||||||||||||||| ||||||||||||||    
T  18339839 tatggaggatctgaatgggtgtactggttttacactgacgagagttaattggac 18339786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 18303657 - 18303865
Alignment:
Q  66 tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg 165  Q
    ||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||    || || ||||| |||||| |||||||||||||| |||| |    
T  18303657 tataatgctcgtggaaaggatgtaatgatgccggaggtttcattcaaggattttcgcaaaggctcgcaattctttatcctgaaccggaaacatgcaaagg 18303756  T
Q  166 ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc 265  Q
    ||||  || ||||||||||| | ||||| ||||||| ||||||||||| | ||| |||||  |||||||| || |||||||| ||| |||||||||||||    
T  18303757 ttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagatacgtattcctgttacccggaagagcattactttccgactcttctatc 18303856  T
Q  266 aatggagga 274  Q
     ||||||||    
T  18303857 gatggagga 18303865  T

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