View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-2 (Length: 820)
Name: NF1809R-Insertion-2
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 655; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 9 - 743
Target Start/End: Original strand, 45982381 - 45983115
Alignment:
| Q |
9 |
catttcctttaatctctttaaataaaggtacgtaaccacaatctgggccgcaatatcagagaattttgatgtctctgtgactgcaatggactgtgattga |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45982381 |
catttcctttaatctctttaaataaaggtacgtaaccacaatgtgcgccgcaatatcagagaattttgatgtctctgtgactgcaatggactgtgattga |
45982480 |
T |
|
| Q |
109 |
ggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggcaattgaaaaccttggggaagagaaaaacagtga |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
45982481 |
ggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggtaattgaaagccttggggaagagaaaaacagtga |
45982580 |
T |
|
| Q |
209 |
taaagacagtatttttcccaaacagcgagcttttgatccaaaacagattgaaccttttgacgaatggaatcaacaccctttcacaaaaacaaagaaataa |
308 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |
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| T |
45982581 |
taaagacagtatttttcccaaacagtgagcttttgatccaaaacagattgaaccttttgtcgaatgcaatcaacaccctttcacaaaaacaaacaaataa |
45982680 |
T |
|
| Q |
309 |
ataaataatcaattttaatcacagtgttcgttagttaccgtaattaaacttaattaaattgaattaaccaatttctttgaatgaaggaaggagagaaatg |
408 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
45982681 |
ataaataatcaattttaatcatagtgttcgttaattactctaattaaacttaattaaattgaattaagaaatttcttagaatgaaggaaggagagaaatg |
45982780 |
T |
|
| Q |
409 |
caacctgtgtgagatgttgggatctttgagtagcttcggtgttgagcttggtggatgcttccctgaaacacaatgatcaattacgctgtagaattgcaat |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45982781 |
aaacctgtgtgagatgttgggatctttgagtagcttcagcattgagcttggtggatgcttccctgaaacacaatgatcaattacgctgtagaattgcaat |
45982880 |
T |
|
| Q |
509 |
aacaacaaaatttgaagaaagaagaagaagcgagaaaggggttagttagttactggaagtagaaatcgaaagtatcgatgaagaaatcgtcaacggtgtt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45982881 |
aacaacaaaatttgaagaaagaagaagaagcgagaaaggggttagttagttactggaagtagaaatcgaaagtatcgatgaagaaatcgtcaacggtgtt |
45982980 |
T |
|
| Q |
609 |
gagaacttcgttgaagaagagttgtggattcagattcatcaccgattcaaaaacggcctcgctctcacttccttccattcccgccacaattcgattccca |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45982981 |
gagaacttcgttgaagaagagttgtggattcagattcatcaccgattcaaaaacggcctcgctctcacttccttccattcccgccacaattcgattccca |
45983080 |
T |
|
| Q |
709 |
aaatttcagtccaacagcacaatgatggaaatatt |
743 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
45983081 |
aaatttcagttcaacagcacaatgatggaaatatt |
45983115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 9 - 478
Target Start/End: Complemental strand, 45868624 - 45868155
Alignment:
| Q |
9 |
catttcctttaatctctttaaataaaggtacgtaaccacaatctgggccgcaatatcagagaattttgatgtctctgtgactgcaatggactgtgattga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45868624 |
catttcctttaatctctttaaataaaggtacgtaaccacaatgtgcgccgcaatatcagagaattttgatgtctctgtgactgcaatggactgtgattga |
45868525 |
T |
|
| Q |
109 |
ggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggcaattgaaaaccttggggaagagaaaaacagtga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
45868524 |
ggccacattgaccataattagtgaataacaacaagttggagcagaacatacattgagagtgtttggtaattgaaagccttggggaagagaaaaacagtga |
45868425 |
T |
|
| Q |
209 |
taaagacagtatttttcccaaacagcgagcttttgatccaaaacagattgaaccttttgacgaatggaatcaacaccctttcacaaaaacaaagaaataa |
308 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
45868424 |
taaagacagtatttttcccaaacagtgagcttttgatccaaaacagattgaaccttttgtcgaatgcaatcaacaccctttcacaaaaacaaacaaataa |
45868325 |
T |
|
| Q |
309 |
ataaataatcaattttaatcacagtgttcgttagttaccgtaattaaacttaattaaattgaattaaccaatttctttgaatgaaggaaggagagaaatg |
408 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
45868324 |
ataaataatcaattttaatcatagtgttcgttaattactctaattaaacttaattaaattgaattaagaaatttcttagaatgaaggaaggagagaaatg |
45868225 |
T |
|
| Q |
409 |
caacctgtgtgagatgttgggatctttgagtagcttcggtgttgagcttggtggatgcttccctgaaaca |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
45868224 |
aaacctgtgtgagatgttgggatctttgagtagcttcagcattgagcttggtggatgcttccctgaaaca |
45868155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 557 - 674
Target Start/End: Complemental strand, 45868078 - 45867961
Alignment:
| Q |
557 |
gttactggaagtagaaatcgaaagtatcgatgaagaaatcgtcaacggtgttgagaacttcgttgaagaagagttgtggattcagattcatcaccgattc |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45868078 |
gttactggaagtagaaatcgaaagtatcgaggacgaaatcatcaacagtgttgagaacttcgttgaagaagagttgtggattcaaattcatcaccgattc |
45867979 |
T |
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| Q |
657 |
aaaaacggcctcgctctc |
674 |
Q |
| |
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|||| || |||||||| |
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| T |
45867978 |
gaaaatcgcatcgctctc |
45867961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 40893171 - 40893035
Alignment:
| Q |
166 |
agtgtttggcaattgaaaaccttggggaagagaaaaacagtgataaagacagtatttttcccaaacagcgagcttttgatccaaaacagattgaaccttt |
265 |
Q |
| |
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|||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||| |
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| T |
40893171 |
agtgtttggcaaatgaaaacctcgaggaagagaaaaacagtgatgaagagagtattttccccaaacagcgagcttttgatccaaaa----------cttt |
40893082 |
T |
|
| Q |
266 |
tgacgaatggaatcaacaccctttcacaaaaacaaagaaataaataa |
312 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
40893081 |
tgacgaatgcaatcaacaccctttcacaaaatcaagtaaataaataa |
40893035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 40892930 - 40892841
Alignment:
| Q |
389 |
atgaaggaaggagagaaatgcaacctgtgtgagatgttgggatctttgagtagcttcggtgttgagcttggtggatgcttccctgaaaca |
478 |
Q |
| |
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||||| ||||||||||||| ||||||| | ||||||||||||||||| |||| ||| | ||| ||||||||| ||||||||||||||| |
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| T |
40892930 |
atgaaagaaggagagaaattaaacctgtataagatgttgggatctttgggtaggttcagcattgggcttggtgggtgcttccctgaaaca |
40892841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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