View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-21 (Length: 277)
Name: NF1809R-Insertion-21
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-21 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 27945779 - 27945517
Alignment:
| Q |
13 |
gctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaaggaaggttggttcaagtatatgagatgg |
112 |
Q |
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| T |
27945779 |
gctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaatgaaggttggttcaagtat--gagatgg |
27945682 |
T |
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| Q |
113 |
aaaacatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagt |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27945681 |
aaaacatactactgtcactgagtattagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctgcaaatcttgtagt |
27945582 |
T |
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| Q |
213 |
atccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctcc |
277 |
Q |
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| T |
27945581 |
atccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctcc |
27945517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 27437292 - 27437025
Alignment:
| Q |
13 |
gctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaaggaa-----ggttggttcaagtatatga |
107 |
Q |
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| T |
27437292 |
gctggaagacatcttcggtgcaaggaataggaaggccaaccattggatgatcatattcaacaagtcttgaaatgaaatgaaggttggtacatgtat--ga |
27437195 |
T |
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| Q |
108 |
gatggaaaacatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatctt |
207 |
Q |
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| T |
27437194 |
gatagaaatcatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatctt |
27437095 |
T |
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| Q |
208 |
gtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctcc |
277 |
Q |
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| T |
27437094 |
gtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctcc |
27437025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 91 - 274
Target Start/End: Original strand, 27549020 - 27549201
Alignment:
| Q |
91 |
ttggttcaagtatatgagatggaaaacatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatattt |
190 |
Q |
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| T |
27549020 |
ttggttcaagtat--gagatggaaaacatactacagtcagtgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatattt |
27549117 |
T |
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| Q |
191 |
cgtcctctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttc |
274 |
Q |
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| T |
27549118 |
cgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagcttttaacaatccaatacggcttctccttc |
27549201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 134 - 274
Target Start/End: Complemental strand, 26766496 - 26766356
Alignment:
| Q |
134 |
gtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaagtct |
233 |
Q |
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| T |
26766496 |
gtagtagtatgaacggcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtct |
26766397 |
T |
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| Q |
234 |
caccccacgagtttttaacgatccaatacggcttctccttc |
274 |
Q |
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| T |
26766396 |
caccccatgagtttttaattatccaatatggcttctccttc |
26766356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 27504001 - 27503968
Alignment:
| Q |
70 |
caacaagtcttgaaaggaaggttggttcaagtat |
103 |
Q |
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| T |
27504001 |
caacaagtcttgaaatgaaggttggttcaagtat |
27503968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 7400625 - 7400539
Alignment:
| Q |
143 |
tgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaa |
229 |
Q |
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| T |
7400625 |
tgagctgcagcaacagtggagaccatggaatccactccacatacatttcggcctctgcagatcttgtaatatccttcctcaccccaa |
7400539 |
T |
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