View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-22 (Length: 257)
Name: NF1809R-Insertion-22
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-22 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 40073166 - 40072933
Alignment:
| Q |
21 |
caacataatgcataaaaataccaagtaattacacatcatttgctacagagatctcatgccttccagatgaaacctcagcaacattctcatcatgcacctt |
120 |
Q |
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| T |
40073166 |
caacataatgcataaaaataccaagtaattacacagcatttgctacagagatctcatgccttccagatgaaacctcagcaacattctcatcatgcacctt |
40073067 |
T |
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| Q |
121 |
aaccttgtacattggtgcatcctctgtcaatgctacatcatgttgttgaataacaagaactgatgacgccatcttgtgacccattgaggatgtaagtata |
220 |
Q |
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| T |
40073066 |
aaccttgtacattggtacatcctctgtcaatgctacatcatgttgttgaataacaaaaactgatgacgccatcttgtgacccattgaggatgtaagtata |
40072967 |
T |
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| Q |
221 |
tctcctatgggacctaactctgcatgctctgctt |
254 |
Q |
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| T |
40072966 |
tctcctatgggacctaactctgcatgctctgctt |
40072933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 40032495 - 40032276
Alignment:
| Q |
27 |
aatgcataaaaataccaagtaattacacatcatttgctacagagatctcatgccttccagatgaaacctcagcaacattctcatcatgcaccttaacctt |
126 |
Q |
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||||| |||||||| ||||||||||| ||||| ||| || ||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||| | |
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| T |
40032495 |
aatgcttaaaaataataagtaattacattgcatttactatagtgatttcatgtcttccagatgaaacctctacaacattctcatcatgcaccttgaccgt |
40032396 |
T |
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| Q |
127 |
gtacattggtgcatcctctgtcaatgctacatcatgttgttgaataacaagaactgatgacgccatcttgtgacccattgaggatgtaagtatatctcct |
226 |
Q |
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| T |
40032395 |
gtacattggtgcatcttctgttaatgtcacatcatgttgttgaataacaagtattgatgacaccattttgcgtcctgttgaggatgttaaaatgtctcct |
40032296 |
T |
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| Q |
227 |
atgggacctaactctgcatg |
246 |
Q |
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| T |
40032295 |
atgggacctaactctgcatg |
40032276 |
T |
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Back To:
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