View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809R-Insertion-3 (Length: 804)

Name: NF1809R-Insertion-3
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809R-Insertion-3
NF1809R-Insertion-3
[»] chr1 (1 HSPs)
chr1 (9-802)||(16509334-16510112)


Alignment Details
Target: chr1 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 9 - 802
Target Start/End: Original strand, 16509334 - 16510112
Alignment:
Q  9 gctcgtgttcttgcaacgccgccgaatcaaaaccctaactccgacgagtctgatgcatgcaaagcttcgatcatcaaagtcaaaggcgaacctcaagaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||    
T  16509334 gctcgtgttcttgcaacgccgccgaatcaaaaccctaactccgacgagtctgatgcatgcaaagcttcgatcatcaaagtcaaagacgaaccgcgcgaat 16509433  T
Q  109 ttgaagatgaggcaaaatctgtcaccgtcgcttttcaacctccggcggcggagacggtggtggagtgtaagacggaatctgatgaaccacgttcgatgct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16509434 ttgaagatgaggcaaaatctgtcaccgtcgcttttcaacctccggcggcggagacggtggtggagtgtaagacggaatctgatgaacgacgttcgatgct 16509533  T
Q  209 tgcgttcgatgattttttgaaagctacgaacacgaaagttgcttctgttgatgaatcgatgaaatcaatggaggctgaatcaacggttcaaacgaaggta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||    
T  16509534 tgcgttcgatgattttttgaaagctacgaacacgaaagttgcttctgttgatgaatcgttgaaatcaatggaagctgaatcaacgattcaaatgaaggta 16509633  T
Q  309 gaaagttctgatgttgatgtggttttcgagacgcaagaatcggtgaaatcattggatgaagttcctaatctcaatgtggtttgcgatacacaagaatcgg 408  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  16509634 gaaagttctgatgttgatgtagtttttgagacgcaagaatcggtgaaatcaatggaagaagttcctaatctcaatgtggtttgcgatacacaagaatcgg 16509733  T
Q  409 ttatggttgaaccggttaaggttgagccggttaaggttgaaccggttaaggttgaaccagttaaacaaccaacattggctgaaccggtttgtgcagagaa 508  Q
    |||||| ||||               |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  16509734 ttatggctgaa---------------ccggttaaggttgaaccggttaaggttggaccggttaaacaaccaacattggctgaaccggtttgtgcagagaa 16509818  T
Q  509 gaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaagggaaagcagctgtgagtgatgaagttagggttttgaaggtggtgaagaaggag 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16509819 gaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaggggaaagaagctgtgagtgatgaagttagggttttgaaggtggtgaagaaggag 16509918  T
Q  609 gtagttgaggagaagaagattctgattccgaatctcgaggatggtgagtttcctgttgagcctgggtggtcattgttgggaaggaagattgagattgcta 708  Q
    |||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16509919 gtagttgaagagaagaagatccagattccgaatcttgaggatggtgagtttcctgttgagcctgggtggtcattgttgggaaggaagattgagattgcta 16510018  T
Q  709 cttctactgctaaaggagtgagaagattggttgataatgagattatttattttgattttccgaatccgcatacgtcgtataagtttcaatggat 802  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16510019 cttctactgctaaaggagtgagaagattggtggataatgagattatttattttgattttccgaatccgcatacgtcgtataagtttcaatggat 16510112  T

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