View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-5 (Length: 745)
Name: NF1809R-Insertion-5
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 47436148 - 47435702
Alignment:
| Q |
8 |
aaaattgcttttatttctcattttattct--tggttgaactaatggttatgcatgttttgttaattgttttgtgtcttagattgaaatgttgacaggaaa |
105 |
Q |
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| T |
47436148 |
aaaattgcttttatttctcattttcttctattggttgaactaatggttatgcat--tttgttaattcttttgtgtcttagattgaaatgttgacaggaaa |
47436051 |
T |
|
| Q |
106 |
ggtaataaacgatgtagatgtagtgggttcctcctctaaatttggtcaaatgcctacacctgcatttgaaataggaagtaatagtgacatatcttcaagc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47436050 |
ggtaataaacgatgtagatgtagtgggttcctcctctaaaattggtcaaatgcctacacctgcatttgaaataggaagtaatagtgacatatcttcaagc |
47435951 |
T |
|
| Q |
206 |
atgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtagaacttgctgtggttt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435950 |
atgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacgattgtagaacttgctgtggttt |
47435851 |
T |
|
| Q |
306 |
ctatggaggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctgaatacgttagggtttt |
405 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435850 |
ctatggaggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatgaagctgaatacgttagggtttt |
47435751 |
T |
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| Q |
406 |
ccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435750 |
ccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
47435702 |
T |
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