View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-6 (Length: 735)
Name: NF1809R-Insertion-6
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 665; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 8 - 735
Target Start/End: Original strand, 43143558 - 43144285
Alignment:
| Q |
8 |
acttttcatttaggcttttgataatgtatcattattaaaaagggttttattatatagccttgttcgatgggctttgacactagtggaagaacattctttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143558 |
acttttcatttaggcttttgataatgtatcattattaaaaagggttttattgtacagccttgttcgatgggctttgacactagtggaagaacattctttc |
43143657 |
T |
|
| Q |
108 |
tgtggggaggctgtatgatggcaagcaccttttgccttttcttagttgtcactttaaagaaaaacttaattttaacatgttagtttttctccagatgcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143658 |
tgtggggaggctgtatgatggcaagcaccttttgccttttcttagttgtcactttaaagaaaaacttaattttaacatgttagtttttctccagatgcat |
43143757 |
T |
|
| Q |
208 |
gccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatctt |
307 |
Q |
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| T |
43143758 |
gccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattttgatgatatgactcttgcagccatagctggtacatctt |
43143857 |
T |
|
| Q |
308 |
tggttctcttatcaaatttctttgatgcaattagcacattgatcatataaatatgatgaagatgaacattacgaaggagtcaaacaaacgaaacacgtga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143858 |
tggttctcttatcaaatttctttgatgcaattagcacattgatcatataaatatgatgaagatgaacattacgaaggagtcaaacaaacgaaacacgtga |
43143957 |
T |
|
| Q |
408 |
aggnnnnnnnnnnnnnnnnngcgcgcctacttgtgaattccgccaaatgcgtttgacttcttcctagctaacatttagcactcctaaatatttaaacaca |
507 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143958 |
aggtttttttttttttttttgcgcgcctacttgtgaattccgccaaatgcgtttgacttcttcctagctaacatttagcactcctaaatatttaaacaca |
43144057 |
T |
|
| Q |
508 |
gtgatcatcatatttaacttctctatctgcaccattgaaaaaccgattacttgataattgatccataaaaaatctgattcttcatagggattacgcaatt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144058 |
gtgatcatcatatttaacttctctatctgcaccattgaaaaaccgattacttgataattgatccataaaaaatctgattcttcatagggattacgcaatt |
43144157 |
T |
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| Q |
608 |
gtaattagtaagagcactttcttctagtttcttaatgcttattcatgtgcaattactataatgctgtcttttgcaggggctcataaaagacttattactt |
707 |
Q |
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| T |
43144158 |
gtaattagtaagagcactttcttctagtttcttaatgcttattcatgtgcaattactataatgctgtcttttgcaggggctcataaaagacttattactt |
43144257 |
T |
|
| Q |
708 |
ctcccccacttgctctctttcctcaccc |
735 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
43144258 |
ctcccccacttgctctctttcctcaccc |
43144285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 51 - 326
Target Start/End: Original strand, 43155707 - 43155982
Alignment:
| Q |
51 |
gttttattatatagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttctt |
150 |
Q |
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||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
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| T |
43155707 |
gttttattatacagccctgttcgatgggctttgccactggtggaagaacattctttctttggggaggctgtatgatggcaagtagcttttgccttttctt |
43155806 |
T |
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| Q |
151 |
agttgtcactttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggac |
250 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43155807 |
agttgtcgctttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggac |
43155906 |
T |
|
| Q |
251 |
ttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatctttggttctcttatcaaattt |
326 |
Q |
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| T |
43155907 |
ttaaagatggtggatattctgatgatatgactcttgcagccatagctggtacatcttcggttgtcttatcaaattt |
43155982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 657 - 735
Target Start/End: Original strand, 43156567 - 43156645
Alignment:
| Q |
657 |
caattactataatgctgtcttttgcaggggctcataaaagacttattacttctcccccacttgctctctttcctcaccc |
735 |
Q |
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| T |
43156567 |
caattactataatgctgtcttttgcaggggctcataaaagacttattacttctcccccagttgctgtctttcctcaccc |
43156645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 33833754 - 33833645
Alignment:
| Q |
191 |
tttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattctgatgatatgactcttgcagc |
290 |
Q |
| |
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||||||| |||||||||| || ||||||||||||||| || |||||||||||| | |||| || |||||||||||||||||||||||||||||||||| |
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| T |
33833754 |
tttttctaaagatgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcaaaatggtggatattctgatgatatgactcttgcagc |
33833655 |
T |
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| Q |
291 |
catagctggt |
300 |
Q |
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|||||||||| |
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| T |
33833654 |
catagctggt |
33833645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 33833886 - 33833817
Alignment:
| Q |
63 |
agccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaag |
132 |
Q |
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|||||||||| || || |||| |||| |||||| ||| |||||| |||||||||| || ||||||||||| |
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| T |
33833886 |
agccttgttcaataggatttgccactggtggaaaaaccttctttttgtggggaggttgcatgatggcaag |
33833817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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