View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809R-Insertion-9 (Length: 585)
Name: NF1809R-Insertion-9
Description: NF1809R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809R-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 9 - 585
Target Start/End: Original strand, 17232555 - 17233139
Alignment:
| Q |
9 |
aggaggatggtcgtctggacattccagacaatatggaccctgacattcaataacagaatcataggcgaaagggtaacctttctaagttcatcccagagct |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232555 |
aggaggatggttgtctggacattccagacaatatggaccctgacattcaataacagaatcataggcgaaagggtaacctttctaagttcatcccagagct |
17232654 |
T |
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| Q |
109 |
tgtagcagtttgcattacgaggaccatgttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtaca |
208 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232655 |
tgtagtagtttgcattatgaggaccatgttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtaca |
17232754 |
T |
|
| Q |
209 |
aattgactctatcggatcaggcacagcgatgcccttaggttgaaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232755 |
aattgactctatcggatcaggcacagcgatgcccttaggttgaaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaa |
17232854 |
T |
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| Q |
309 |
cagtgaattatatcatatcataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaat |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232855 |
cagtgaattatatcaaatcataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaat |
17232954 |
T |
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| Q |
409 |
gtt----nnnnnnnttaca----cagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagact |
500 |
Q |
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| T |
17232955 |
gtttgggggagggggtacactatcagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagact |
17233054 |
T |
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| Q |
501 |
aggtgtgccgccgtgtccgacactcctatgatactcgtcgacacatgttagacaaccaaaaccgatatcctaaataattttttct |
585 |
Q |
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| T |
17233055 |
aggtgtgccgccgtgtccgacactcctatgatactcgtcaacacatgttggacaaccaaaaccgatatcctaaataattttttct |
17233139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 22768616 - 22768750
Alignment:
| Q |
137 |
ttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatcggatcaggcacagcg |
236 |
Q |
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| T |
22768616 |
ttaccagatgattgcacactaacatgagagtatgaaccataagaaagggg-atcgcttccccatctggtacaaattgattgtattggatcaggcacagtg |
22768714 |
T |
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| Q |
237 |
atgcccttaggttgaaaaatgcctgtacaaaaatat |
272 |
Q |
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| T |
22768715 |
atgcctttaggttgaaaaatacctgtagaaaaatat |
22768750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 137 - 336
Target Start/End: Original strand, 21646226 - 21646420
Alignment:
| Q |
137 |
ttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatcggatcaggcacagcg |
236 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||||| | ||||||||||| | ||| |||||||||||| | |
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| T |
21646226 |
ttaccagatgattgcacactgacatgagagtatgaaccataagaaa-agggatcgcttccccatctcgtacaaattgattgtattggatcaggcacattg |
21646324 |
T |
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| Q |
237 |
atgcccttaggttgaaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaacagtgaattatatcatatcataagatta |
336 |
Q |
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| T |
21646325 |
atgcctttaggttgaaaaatacctgcagaaagatatat----aaaatgataatcggaaccacattttttaaacagtgaattatattaattcataagatta |
21646420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 23289757 - 23289839
Alignment:
| Q |
55 |
tcaataacagaatcataggcgaaagggtaacctttctaagttcatcccagagcttgtagcagtttgcattacgaggaccatgt |
137 |
Q |
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|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| || | |||||| ||||||||||| |
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| T |
23289757 |
tcaataacagaatcatgggcgaaagagaaacctttctaagttcatcccagagcttgtagaagctggcattatgaggaccatgt |
23289839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 21624469 - 21624513
Alignment:
| Q |
137 |
ttaccagatgattgcacactaacatgagaatatgaaccataagaa |
181 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
21624469 |
ttaccagatgattgcacactgacatgagagtatgaaccataagaa |
21624513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 577
Target Start/End: Complemental strand, 11411071 - 11411005
Alignment:
| Q |
512 |
cgtgtccgacactcctatgatactcgtc-gacacatgttagacaaccaaaaccgatatcctaaataa |
577 |
Q |
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|||||||||||||||||||| ||| ||| ||||||||| |||||| |||| |||| |||||||||| |
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| T |
11411071 |
cgtgtccgacactcctatgacacttgtctgacacatgtcggacaactaaaatcgatgtcctaaataa |
11411005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 577
Target Start/End: Original strand, 32676409 - 32676488
Alignment:
| Q |
499 |
ctaggtgtgccgccgtgtccgacactcctatgatactcgt-cgacacatgttagacaaccaaaaccgatatcctaaataa |
577 |
Q |
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||||||||| ||||||||||||||||||||||| ||| || |||||| |||| |||| | | |||||| |||||||||| |
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| T |
32676409 |
ctaggtgtgtcgccgtgtccgacactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataa |
32676488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 15007737 - 15007779
Alignment:
| Q |
9 |
aggaggatggtcgtctggacattccagacaatatggaccctga |
51 |
Q |
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|||||||||| ||||||||||||||||||| ||||| |||||| |
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| T |
15007737 |
aggaggatggccgtctggacattccagacattatggcccctga |
15007779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 15021854 - 15021896
Alignment:
| Q |
9 |
aggaggatggtcgtctggacattccagacaatatggaccctga |
51 |
Q |
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|||||||||| ||||||||||||||||||| ||||| |||||| |
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| T |
15021854 |
aggaggatggccgtctggacattccagacattatggcccctga |
15021896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 15028972 - 15029014
Alignment:
| Q |
9 |
aggaggatggtcgtctggacattccagacaatatggaccctga |
51 |
Q |
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|||||||||| ||||||||||||||||||| ||||| |||||| |
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| T |
15028972 |
aggaggatggccgtctggacattccagacattatggcccctga |
15029014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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