View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809_high_10 (Length: 436)
Name: NF1809_high_10
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 52242744 - 52242325
Alignment:
| Q |
9 |
aacaataacaatttcccgccagattttgaatggagagattttatagttattctgaacaacgagagggtattcagttaggatatgatgaagatgagagtag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52242744 |
aacaataacaatttcccgccagattttgaatggagagattttatagttattctgaacaacgagagggtattcagttaggatatgatgaagatgagagtag |
52242645 |
T |
|
| Q |
109 |
taacaatccgagcacatcacagaggaaatcagacgttgattttaatgatgtgtttgggggaccgccgcggaggaggtcatcggtgagtggaggagaggaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52242644 |
taacaatccgagcacatcacagaggaaatcagacgttgattttaatgatgtgtttgggggaccaccgcggaggaggtcatcggtgagtggaggagaggaa |
52242545 |
T |
|
| Q |
209 |
ggtgaaacgggttggtgtagttggcctcctccgcctgagagcgagaaaccggtgtttggtgaggatagtggagttaggaggagaagaaaaggaaaagatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52242544 |
ggtgaaacgggttggtgtagttggcctcctccgcctgagagcgagaaaccagtgtttggtgaggatagtggagctaggaggagaagaaaaggaaaagatt |
52242445 |
T |
|
| Q |
309 |
tctttgatgatatatttggaggagaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcctgctct |
408 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52242444 |
tttttgatgatatatttggaggagaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcctgctct |
52242345 |
T |
|
| Q |
409 |
tcgaccacttgcttcatctc |
428 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
52242344 |
tcgaccacttgcttcttctc |
52242325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University