View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_high_12 (Length: 419)
Name: NF1809_high_12
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 59 - 408
Target Start/End: Complemental strand, 2108710 - 2108361
Alignment:
| Q |
59 |
aaaacaggtaggagaagtggaacaccaagacttttcagaaggtcacccatttcagtattactatttatccgtacacatttaatttgtatttactttgtta |
158 |
Q |
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| T |
2108710 |
aaaacaggtaggagaagtggaacaccaagacttttcagaaggtcacccattttaatattactatttatccacacacatttaatttgtatttactttctta |
2108611 |
T |
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| Q |
159 |
gataagtatccatataaagaaagtccaaacccgataaatagtaaatcatttttgctccttcttaaaatgtttttacaacatgtttttgataaattactct |
258 |
Q |
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| T |
2108610 |
gataagtatccatataaagaaagtccaaacctgataaattgtaaatcatttttgctccttcttaaaatgtttttacaacatgtttttgataaattactct |
2108511 |
T |
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| Q |
259 |
annnnnnnccatccatttattcacaaaaattaggaagatagttctctaggtatgtacaacaactcttttccattgttttcctttcttgtttaaaatgctt |
358 |
Q |
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| T |
2108510 |
atttttttccatccatttattcacaaaaattaggaagatagttctctaggtatgtacaacaactcttttccattgttttcctttcttgtttaaaatgctt |
2108411 |
T |
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| Q |
359 |
aacatttactctttcatgacacttgaggaaggtgaactctataatatatt |
408 |
Q |
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| T |
2108410 |
aacatttactctttcatgacagttgaggaaggtgaactctataatatatt |
2108361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2108770 - 2108736
Alignment:
| Q |
1 |
ctgaaaagcaaatttcaaagttgtattttattatt |
35 |
Q |
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| T |
2108770 |
ctgaaaagcaaatttcaaagtagtattttattatt |
2108736 |
T |
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