View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_high_27 (Length: 280)
Name: NF1809_high_27
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 27945524 - 27945783
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
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| T |
27945524 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcaggggacgaaatatctgtggagtggact |
27945623 |
T |
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| Q |
101 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaaccttcctttcaagacttgtt |
200 |
Q |
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| T |
27945624 |
caatggtttctactgtggctgctgctcacactaatactcagtgacagtagtatgttttccatctc--atacttgaaccaaccttcatttcaagacttgtt |
27945721 |
T |
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| Q |
201 |
ggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacat |
262 |
Q |
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| T |
27945722 |
ggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacat |
27945783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 27437032 - 27437296
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
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| T |
27437032 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
27437131 |
T |
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| Q |
101 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaacc-----ttcctttcaagac |
195 |
Q |
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| T |
27437132 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgatttctatctc--atacatgtaccaaccttcatttcatttcaagac |
27437229 |
T |
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| Q |
196 |
ttgttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacat |
262 |
Q |
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| T |
27437230 |
ttgttgaatatgatcatccaatggttggccttcctattccttgcaccgaagatgtcttccagcacat |
27437296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 27549197 - 27549020
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
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| T |
27549197 |
gagaagccgtattggattgttaaaagctcctggggcgagacgtggggagaaaatggatactataagatttgtaggggacgaaatatctgtggagtggact |
27549098 |
T |
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| Q |
101 |
caatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaa |
180 |
Q |
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| T |
27549097 |
caatggtttctactgtggctgctgctcaaactacaactcactgactgtagtatgttttccatctc--atacttgaaccaa |
27549020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 26766360 - 26766496
Alignment:
| Q |
1 |
gagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggact |
100 |
Q |
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| T |
26766360 |
gagaagccatattggataattaaaaactcatggggtgagacttggggagaaaatggatactataaaatatgcaggggacgaaatatctgcggagtggact |
26766459 |
T |
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| Q |
101 |
caatggtttctactgtggctgctgctcacactactac |
137 |
Q |
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| T |
26766460 |
ctatggtttctactgtggctgccgttcatactactac |
26766496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 27503968 - 27504001
Alignment:
| Q |
168 |
atacttgaaccaaccttcctttcaagacttgttg |
201 |
Q |
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| T |
27503968 |
atacttgaaccaaccttcatttcaagacttgttg |
27504001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 7400539 - 7400625
Alignment:
| Q |
42 |
ttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctactgtggctgctgctca |
128 |
Q |
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| T |
7400539 |
ttggggtgaggaaggatattacaagatctgcagaggccgaaatgtatgtggagtggattccatggtctccactgttgctgcagctca |
7400625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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