View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_high_3 (Length: 700)
Name: NF1809_high_3
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 239 - 685
Target Start/End: Original strand, 47435702 - 47436148
Alignment:
| Q |
239 |
tgaagattcagattttaaccccatgagtttcggacttattccattggggaaaaccctaacgtattcagcttcatttagaatctcagtgtcattggtggaa |
338 |
Q |
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| T |
47435702 |
tgaagattcagattttaaccccatgagtttcggacttattccattggggaaaaccctaacgtattcagcttcatttagaatctcagtgtcattggtggaa |
47435801 |
T |
|
| Q |
339 |
atccataaaggggatccagcaagagttaacattgtgagttcctccatagaaaccacagcaagttctacaatcgttgctttgtcaacttcattaggaattg |
438 |
Q |
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| T |
47435802 |
atccataaaggggatccagcaagagttaagattgtgagttcctccatagaaaccacagcaagttctacaatcgttgctttgtcaacttcattaggaattg |
47435901 |
T |
|
| Q |
439 |
agagggaccctaaggggtcattaccaccataacacagttcttctatcatgcttgaagatatgtcactattacttcctatttcaaatgcaggtgtaggcat |
538 |
Q |
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| T |
47435902 |
agagggaccctaaggggtcattaccaccataacacagttcttctatcatgcttgaagatatgtcactattacttcctatttcaaatgcaggtgtaggcat |
47436001 |
T |
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| Q |
539 |
ttgaccaaatttagaggaggaacccactacatctacatcgtttattacctttcctgtcaacatttcaatctaagacacaaaacaattaacaaaacatgca |
638 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
47436002 |
ttgaccaattttagaggaggaacccactacatctacatcgtttattacctttcctgtcaacatttcaatctaagacacaaaagaattaacaaa--atgca |
47436099 |
T |
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| Q |
639 |
taaccattagttcaacca--agaataaaatgagaaataaaagcaatttt |
685 |
Q |
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| T |
47436100 |
taaccattagttcaaccaatagaagaaaatgagaaataaaagcaatttt |
47436148 |
T |
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