View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809_high_42 (Length: 238)

Name: NF1809_high_42
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809_high_42
NF1809_high_42
[»] chr6 (2 HSPs)
chr6 (88-220)||(34551948-34552079)
chr6 (2-54)||(34552163-34552215)
[»] chr8 (2 HSPs)
chr8 (8-53)||(41959968-41960013)
chr8 (18-54)||(30486694-30486730)
[»] chr4 (2 HSPs)
chr4 (8-45)||(7996782-7996819)
chr4 (2-53)||(40252723-40252774)
[»] chr7 (1 HSPs)
chr7 (98-155)||(2354970-2355027)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 34552079 - 34551948
Alignment:
Q  88 actcgagatgtaaatacttagttattttactaatgatttttaagttttgtttcaaaaatctt-gtaaaatatttttattgatagtttcctatgcttaaca 186  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  34552079 actcgagatgtaaatacttagttatt--actaatgatttttaagttttgtttcaaaaatcttagtaaaatatttttattgatagtttcctatacttaaca 34551982  T
Q  187 aagaagtagtagtactacgatctgacacaaatcg 220  Q
    |||||||| |||||||||||||||||||||||||    
T  34551981 aagaagtactagtactacgatctgacacaaatcg 34551948  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 34552215 - 34552163
Alignment:
Q  2 ttacacaactttcattaaaaattattatttaaagtccttaatcagtaccccga 54  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  34552215 ttacataactttcattaaaaattatcatttaaagtccttaaccagtgccccga 34552163  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 41960013 - 41959968
Alignment:
Q  8 aactttcattaaaaattattatttaaagtccttaatcagtaccccg 53  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  41960013 aactttcataaaaaattatcatttaaagtccttaaccagtaccccg 41959968  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 30486694 - 30486730
Alignment:
Q  18 aaaaattattatttaaagtccttaatcagtaccccga 54  Q
    |||||||| |||||||||||||||| |||||||||||    
T  30486694 aaaaattactatttaaagtccttaaccagtaccccga 30486730  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 7996782 - 7996819
Alignment:
Q  8 aactttcattaaaaattattatttaaagtccttaatca 45  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7996782 aactttcataaaaaattattatttaaagtccttaatca 7996819  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 40252723 - 40252774
Alignment:
Q  2 ttacacaactttcattaaaaattattatttaaagtccttaatcagtaccccg 53  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||| |||||    
T  40252723 ttacacaactttcataaaaatttactatttaaagtccttaaccagtgccccg 40252774  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 2355027 - 2354970
Alignment:
Q  98 taaatacttagttattttactaatgatttttaagttttgtttcaaaaatcttgtaaaa 155  Q
    |||||| ||||| ||||||||||| | ||||||||||||||| |||| ||| ||||||    
T  2355027 taaatatttagtgattttactaataaattttaagttttgtttaaaaattctagtaaaa 2354970  T

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