View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809_high_5 (Length: 546)
Name: NF1809_high_5
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Original strand, 4783761 - 4784280
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||| ||| ||||| || || ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
4783761 |
agaaggtgtttacttaactgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatg |
4783860 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4783861 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaacatgctgctg |
4783960 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4783961 |
atgtgataaggtggagtggtgctcctttggttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
4784060 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4784061 |
tctttcgatcaagctacaacgattaccaaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaat |
4784160 |
T |
|
| Q |
417 |
aatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacnnnnnnnntccttgctg |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4784161 |
aatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacaacaaaaatccttgctg |
4784260 |
T |
|
| Q |
517 |
tggttgctgtttcatctctc |
536 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
4784261 |
tggttgctgtttcatgtctc |
4784280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Original strand, 4816190 - 4816709
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||| ||| ||||| || || ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
4816190 |
agaaggtgtttacttaactgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatg |
4816289 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4816290 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaactttttgctg |
4816389 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4816390 |
atgtgatatggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcatggcggaagctctcaaattgaaaaagttaa |
4816489 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaat |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4816490 |
tctttcgatcaagctacatcgattaccaaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaat |
4816589 |
T |
|
| Q |
417 |
aatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacnnnnnnnntccttgctg |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4816590 |
aatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacaacaaaaatccttgctg |
4816689 |
T |
|
| Q |
517 |
tggttgctgtttcatctctc |
536 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
4816690 |
tggttgctgtttcatgtctc |
4816709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 4637026 - 4636631
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||| ||| ||||| || || |||||||| |||||| |||||||| ||||||| |||||||||||||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
4637026 |
agaagttgtgtacttaactgcaagaagttacggaatgtatgagacaaaggattataatgtaacttggaactttgaagttgattctgcttttacttatatg |
4636927 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | ||||||||| |||||||| ||||||||| | | ||||| |||| || || | |
|
|
| T |
4636926 |
gtaaggttacatttttgtgagtttgattggcatatcaactataaaggtgatagagtctttcagatattcatagataacactttggttgaagaaaaggcgg |
4636827 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
|||||||| ||||||||||||||| | | |||||||||||||||||||||| || |||||| | || || |||||||||||||| |||| | |
|
|
| T |
4636826 |
atgtgatagggtggagtggtgctcgtatggttcctgttcataaggattatgttgtttctatgg------agggattaatctctcaaattgaaagagttta |
4636733 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaat |
416 |
Q |
| |
|
|||||| |||||||| |||||||||||| || | |||||||| || ||||||||||| | | ||||||||||||||||| ||||| ||||||||| || |
|
|
| T |
4636732 |
tctttcaatcaagcttcaacgattaccacaacccatgcctacagtatatcgtgatgttattcttaatggaatcgagattttcaaaattagtgataaatat |
4636633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 60 - 443
Target Start/End: Complemental strand, 4864048 - 4863662
Alignment:
| Q |
60 |
acagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacagg |
159 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| | | | |
|
|
| T |
4864048 |
acagaggagtacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgatccgaatataacaaata |
4863949 |
T |
|
| Q |
160 |
atggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctgatgtgataaggtggagtggtgctccttttgttcctgttcataa |
259 |
Q |
| |
|
| ||||||||| |||||||||||||||| | ||||| ||||||| || |||||||||||| ||||||| ||| ||| | | |||||||||||||| |
|
|
| T |
4863948 |
aaggtgatagagcctttcagattttcatagttaatagtatggctgaggaaaacgctgatgtgatacggtggagcggttctcgtatggttcctgttcataa |
4863849 |
T |
|
| Q |
260 |
ggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacg |
359 |
Q |
| |
|
||||||| | ||| |||| ||| ||| ||||||||||||||||||| |||||| |||||| ||||| |||||| ||||||||| | ||| ||| |
|
|
| T |
4863848 |
ggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttaca |
4863749 |
T |
|
| Q |
360 |
gtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaa---aataatctctttggagtgaatccaaaaccc |
443 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| |||||||| |||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
4863748 |
aaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
4863662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 4631096 - 4630692
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||||||| ||||| || || ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4631096 |
agaagctgtttacttaactgcgagaagttatggaatggatgcaacaaaggattacaatgtaacttggaattttgaagttgattcttcttttacttatatg |
4630997 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
||||| |||||||||||||||||||| | || | | | | ||||||||| |||||||||||||||| | | | | | ||||| || |||| |
|
|
| T |
4630996 |
gtaagattacatttttgtgagtttgaaatgacgataagagatcaaggtgatagagtctttcagattttcatagctaacattctagctgaggaaaaagctg |
4630897 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||| |||||||||||||| ||| |||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4630896 |
atgtgataaggtggagtggtgctcgtatggttcctactcataaggattatgttgtgcttatgtactctcaagaaggaagctctcaaattgaaagagttaa |
4630797 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaat |
416 |
Q |
| |
|
|||||| |||||||| | |||| |||| || |||| | || | |||||||||||| | |||||||||| |||||||| |||||||||||||||| | |
|
|
| T |
4630796 |
tctttcaatcaagcttcgacgagcaccagaaactatacacacaatatatcgtgatgtcctgctgaatggaattgagattttcaaaataagtgataaaact |
4630697 |
T |
|
| Q |
417 |
aatct |
421 |
Q |
| |
|
||||| |
|
|
| T |
4630696 |
aatct |
4630692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 4667107 - 4666777
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||| ||| ||||| || || ||||||||||||||||||| | |||| |||| ||||| || ||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
4667107 |
agaagttgtgtacttaactgcaagaagttatggaatggatgccaaagagaattataatgtgacatggaattttaaagttgattctatttttacttatatg |
4667008 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||| | ||||||||||||| |||| |
|
|
| T |
4667007 |
gtaaggttgcatttttgtgagtttgattggcatatcaagaatccaggtgatagagtttttcagatttttatagatgatattatggctgaaccaagggctg |
4666908 |
T |
|
| Q |
217 |
atgtgat---aaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagt |
313 |
Q |
| |
|
| ||| | || | ||||||| || | | |||||||||||||||||||||||| ||||||||| ||||||||| || ||| ||||||||||| ||| |
|
|
| T |
4666907 |
acgtgctttattggagtagtggtgttcgtatggttcctgttcataaggattatgccttgactatggattctcaaggagggagccgtcaaattgaaagagt |
4666808 |
T |
|
| Q |
314 |
taatctttcgatcaagctacaacgattacca |
344 |
Q |
| |
|
||||||||| || ||||| |||||| ||||| |
|
|
| T |
4666807 |
taatctttcaattaagcttcaacgagtacca |
4666777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 66 - 336
Target Start/End: Complemental strand, 4643791 - 4643521
Alignment:
| Q |
66 |
gattacaatgtaacttggaattttgaggttgattcttcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtg |
165 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| | | | | |||| |
|
|
| T |
4643791 |
gatttcaatgtaacttggaattttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgatccggatataacaaataaaggtg |
4643692 |
T |
|
| Q |
166 |
atagaagatttcagattttcatagatgatagtttggctgaaccaagtgctgatgtgataaggtggagtggtgctccttttgttcctgttcataaggatta |
265 |
Q |
| |
|
||||| |||||||| ||||||||| | | ||||| |||| || || ||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
4643691 |
atagagtctttcagatattcatagataacactttggttgaagaaaaggcggatgtgatagggtggagtggtgctcgtttggttcctgttcataaggatta |
4643592 |
T |
|
| Q |
266 |
tgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaac |
336 |
Q |
| |
|
||| || |||||| | ||||| |||||||||||| |||||| || ||||||||| |||||||| |||| |
|
|
| T |
4643591 |
tgcaatgtctatggactatcaagaaggaagctctcaacttgaaagagctaatctttcaatcaagcttcaac |
4643521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 4663160 - 4662899
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
|||| |||||||||| || || |||| |||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
4663160 |
agaaactgtatacttaactgcaagaaattatggaaagtatgtgacagaggattataatgtaacttggaattttgaggttgattcttcttttacatacatg |
4663061 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| | | | |||||||||| ||||||||||| |||||||||| ||| | |||| | || | |
|
|
| T |
4663060 |
gtaaggttacatttttgtgagtttgatccgaatatcataaataaaggtgatagaatgtttcagatttttatagatgataatttagttgaagaattagccg |
4662961 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatg |
278 |
Q |
| |
|
||||||||||||||||| || || | | |||||||||||||||||||||| ||||||||| |
|
|
| T |
4662960 |
atgtgataaggtggagtaatggtcgtatggttcctgttcataaggattatggtgtgactatg |
4662899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 4712001 - 4712406
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
4712001 |
agaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatg |
4712100 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| | | ||||||||| |||||||| || || |||||| ||||||||||| | |||| |
|
|
| T |
4712101 |
gtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctg |
4712200 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
||||||| |||||||||| | | |||||||||||||||||||||| |||| ||| |||||| ||||||||| ||||||||| |||||| |
|
|
| T |
4712201 |
atgtgatttactggagtggtggtaacatgattcctgttcataaggattatgctgtgaaaatgtactctcaaaatggaagctctgaaattgaaagagttaa |
4712300 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaat |
416 |
Q |
| |
|
||||| || ||||| |||||| |||| || ||| || || |||||||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
4712301 |
cctttcaattaagcttcaacgagaaccagaaagtatctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaat |
4712400 |
T |
|
| Q |
417 |
aatctc |
422 |
Q |
| |
|
|||||| |
|
|
| T |
4712401 |
aatctc |
4712406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 336
Target Start/End: Complemental strand, 4672790 - 4672526
Alignment:
| Q |
72 |
aatgtaacttggaattttgaggttgattcttcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||||| |
|
|
| T |
4672790 |
aatgtaacttggaattttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttgacaggcttatcattaatacaggtgatagag |
4672691 |
T |
|
| Q |
172 |
gatttcagattttcatagatgatagtttggctgaaccaagtgctgatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgt |
271 |
Q |
| |
|
||||||||||| |||| | | | | ||||||| ||| |||||||| ||||| ||||||||||||| | | ||||||||||||||||||||||| || |
|
|
| T |
4672690 |
cctttcagatttttatagctaacactctggctgaggaaagagctgatgttataagttggagtggtgctcgtatggttcctgttcataaggattatgctgt |
4672591 |
T |
|
| Q |
272 |
gactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaac |
336 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||||||||||| || ||||| |||| |
|
|
| T |
4672590 |
cactatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaac |
4672526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 4845941 - 4846268
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||||||||||||| || || ||||||||||||| | ||| |||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
4845941 |
agaagctgtatacttaactgcaagaagttatggaaagtatgtgacagaggattataatgtaacttggaatttcgaagttgattctagttttacttatatg |
4846040 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||| | | ||||||||| |||||||| || || |||||| ||||||||||| | ||||| |
|
|
| T |
4846041 |
gtaaggttacatttttgtgagtttgatctgcttaccaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaactatatgctg |
4846140 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
||||||| |||||||||| | | |||||||||||||||||||||| |||| || |||||| ||||||||| ||||||||| |||||| |
|
|
| T |
4846141 |
atgtgattttttggagtggtggtaacatgattcctgttcataaggattatgctgtgaaaatctactctcaaaatggaagctctgaaattgaaagagttaa |
4846240 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattacca |
344 |
Q |
| |
|
|||||| |||||||| |||||||||||| |
|
|
| T |
4846241 |
tctttcaatcaagcttcaacgattacca |
4846268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 4653689 - 4653372
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||||||||||| | || || ||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||| || | |||||||||||| |
|
|
| T |
4653689 |
agaagctgtatacctaactgcgagaagttatggaatgaatgtcacagaggattacaatgtaacttggaatttcgaagttgactcaacatttacttatatg |
4653590 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| |||||| | | ||||||||| || ||||| || ||| ||||| ||||||||||||| ||||| |
|
|
| T |
4653589 |
gtcaggttacatttttgtgaatttgattggcgtatcaaggataaaggtgatagagttttccagatatttatacatgatttcttggctgaaccaaatgctg |
4653490 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||||||||||||||| ||||||||| ||| ||| |||||| |||||||||||| |||||| |
|
|
| T |
4653489 |
atgtgatttcatggagcaatgctcgtttgattcctgttcataaggattatgttgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaa |
4653390 |
T |
|
| Q |
317 |
tctttcgatcaagctaca |
334 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
4653389 |
tcttacaatcaagctaca |
4653372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 4697116 - 4697543
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||||||| ||||| || || |||||| |||| |||||||||||||||||| |||||||||||||||||| || |||||| | ||||||||||||| |
|
|
| T |
4697116 |
agaagctgtgtacttaactgcaagaagtcgtggattggatgagacagaggatttcaatgtaacttggaatttcgaagttgatgttggttttacttatatg |
4697215 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| | ||||||||| ||||| || ||||||| | ||| |||||| || || |||| |
|
|
| T |
4697216 |
gtaaggttgcatttttgtgagtttgatcagcatatcaaaaatataggtgatagagtctttcaaatattcatagctaatactttggcggagataaacgctg |
4697315 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
||||||| |||||| | ||||| | |||||||||||||| |||||||| ||| ||||| ||||||| ||||||||||||||||||| | |||| |
|
|
| T |
4697316 |
atgtgatttcttggagtactactcctatggttcctgttcataaagattatgctgtgtctatgcactctcaagaaggaagctctcaaattgaaagacttaa |
4697415 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaa-- |
414 |
Q |
| |
|
|||||| ||||||||||||||| |||| | ||| || || |||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4697416 |
tctttcaatcaagctacaacgagcaccaggacgtatcttcacaagatacggtgatgtcacattgaatggcatcgagattttgaaaataaatgataaaaat |
4697515 |
T |
|
| Q |
415 |
-ataatctctttggagtgaatccaaaac |
441 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
4697516 |
gataatctctttggatcaaatccaaaac |
4697543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 4647625 - 4647561
Alignment:
| Q |
85 |
attttgaggttgattcttcttttacttatatggtaaggttacatttttgtgagtttgattggcatat |
151 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4647625 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatat |
4647561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 4672495 - 4672443
Alignment:
| Q |
367 |
gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataat |
419 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4672495 |
gtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataat |
4672443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 4643494 - 4643454
Alignment:
| Q |
378 |
ttgaatggaatcgagattttgaaaataagtgataaaaataa |
418 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
4643494 |
ttgaatggaatcgagattttaaaaataagtgacaaaaataa |
4643454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 4647437 - 4647378
Alignment:
| Q |
282 |
tctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgatta |
341 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
4647437 |
tctcaaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaacgatta |
4647378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 4846299 - 4846342
Alignment:
| Q |
378 |
ttgaatggaatcgagattttgaaaataagtgataaaaataatct |
421 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
4846299 |
ttgaatggaatcgagattttcaaagtaagtgataaaaacaatct |
4846342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 4666740 - 4666703
Alignment:
| Q |
381 |
aatggaatcgagattttgaaaataagtgataaaaataa |
418 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
4666740 |
aatggaatcgagattttaaaaataagtgacaaaaataa |
4666703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 4661688 - 4661636
Alignment:
| Q |
296 |
ctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaat |
348 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||| |||| |||| |||||| |
|
|
| T |
4661688 |
ctctcaaattgaaagagttgatctttcaatcaagcttcaaccattatcaaaat |
4661636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 7e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 18925668 - 18926069
Alignment:
| Q |
17 |
agaagctgtatacttgaccgctagaagttatggaatggatgagacagaggattacaatgtaacttggaattttgaggttgattcttcttttacttatatg |
116 |
Q |
| |
|
||||| ||||||||| || || ||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||| | ||||||||| || |
|
|
| T |
18925668 |
agaagttgtatacttaactgcaagaagttatggaatggatgcgacaaaggattataatgtaacttggaattttgaagttgattctgcctttacttatttg |
18925767 |
T |
|
| Q |
117 |
gtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaagatttcagattttcatagatgatagtttggctgaaccaagtgctg |
216 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| || | | ||||||||| ||||||||||| |||||||||| ||||||||||| || ||||| |
|
|
| T |
18925768 |
gtaagattgcatttttgcgagtttgattggcatataaagaatcaaggtgatagagtttttcagatttttatagatgataatttggctgaacgaaatgctg |
18925867 |
T |
|
| Q |
217 |
atgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaa |
316 |
Q |
| |
|
||||||| ||||||||||||| | | |||||||||||||||||||||| ||||||||| |||| || |||||||| |||||| ||| |||||| |
|
|
| T |
18925868 |
atgtgattcattggagtggtgctcgtatggttcctgttcataaggattatgttgtgactatgtactctcgagaaggaagctcgcaaattaaaagagttaa |
18925967 |
T |
|
| Q |
317 |
tctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaat |
416 |
Q |
| |
|
|||||| || |||||||||||| |||| || ||| | || ||| ||||||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
18925968 |
tctttcaataaagctacaacgagcaccagaaaatatctactcaaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaat |
18926067 |
T |
|
| Q |
417 |
aa |
418 |
Q |
| |
|
|| |
|
|
| T |
18926068 |
aa |
18926069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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