View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_high_50 (Length: 221)
Name: NF1809_high_50
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 48847082 - 48846895
Alignment:
| Q |
15 |
aatatccaaagcagaaacttcaaaattctgggagacaggttaatccacaaacactctcataattgttgctcttctatgacagtcttgcttctctgctcct |
114 |
Q |
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| T |
48847082 |
aatatccaaagcagaaacttcaaaattctgggagacaggttaatccacaaacactctcataattgttgctcttctatgacagtcttgcttctctgctcct |
48846983 |
T |
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| Q |
115 |
caacaaccacatgttgtaagaacggtatgtcattctgctatactttgactgatactaatttctatgttctcaccaatcatggaggacc |
202 |
Q |
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| T |
48846982 |
caacaaccacatgttgtaacaacggtatgtcattctgctatactttgactgatactaatttctatgttctcaccaatcatggaggacc |
48846895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 55246062 - 55246125
Alignment:
| Q |
139 |
gtatgtcattctgctatactttgactgatactaatttctatgttctcaccaatcatggaggacc |
202 |
Q |
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| T |
55246062 |
gtatatcattctgctatactttgactcatactcatttctatgttcttaccaatcatggaggacc |
55246125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 1634601 - 1634637
Alignment:
| Q |
166 |
atactaatttctatgttctcaccaatcatggaggacc |
202 |
Q |
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| T |
1634601 |
atactcatttctatgttctcaccaatcatggaggacc |
1634637 |
T |
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