View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_high_6 (Length: 544)
Name: NF1809_high_6
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 528
Target Start/End: Complemental strand, 28333370 - 28332853
Alignment:
| Q |
11 |
cataggggaatcagcactatctcataagttacaattcagattcagctgnnnnnnnatctgtcttcaaaccaccttgcattaccatctatatgaagcttct |
110 |
Q |
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| T |
28333370 |
cataggggaatcagcactatctcataagttacaattcagattcagctgtttttttatctgtcttcaaaccaccttgcattaccatctatatgaagcttct |
28333271 |
T |
|
| Q |
111 |
gacctaatgacgcccctcgcaaagcaaaaattcctagctgaaaagtaggtagatacatactgaactatcggggctagtaatgtcttgtattagtcattag |
210 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28333270 |
gacctaatgacgaccctcgcaaagcaaaaattcctagctgaaaagtaggtagatacatactgaactatcggggctagtaatgtcttgtattagtcattag |
28333171 |
T |
|
| Q |
211 |
acataggaaacgtttcagaaatactggattcaagtttacgcaataactctcagcctcaatnnnnnnntcattataccttcaatgcgaggaagcacgacaa |
310 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
28333170 |
acataggaaacgtttcaaaaatactggattcaagtttactcaataactctcagcttcaataaaaaaatcattataccttcaatgcgaggaagcacgacaa |
28333071 |
T |
|
| Q |
311 |
gttaagaactagttatgacttcttctctcccaaagaaatttcagatctgtctatgacaattatgttatgaaatgtgcaaaacgaatcattctcatttctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28333070 |
gttaagaactagttatgacttcttctctcccaaagaaatttcagatctgtctatgacaattatgttatgaaatgtgcaaaacgaataattctcatttctc |
28332971 |
T |
|
| Q |
411 |
atagttgaatcaacatgtacaagaagtatatatagtgttacacttctcctaatcaacaagctaatcaagtaatctcatagttacttgcaaatcaagtaat |
510 |
Q |
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| T |
28332970 |
atagttgaatcaacatgtacaagaagtatatatagtgttacacttctcctaatcaacaagctaatcaagtaatctcatagttacttgcaaatcaagtaat |
28332871 |
T |
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| Q |
511 |
ctgactaactgaactaaa |
528 |
Q |
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|||| ||||||||||||| |
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| T |
28332870 |
ctgattaactgaactaaa |
28332853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 25191211 - 25191255
Alignment:
| Q |
400 |
tctcatttctcatagttgaatcaacatgtacaagaagtatatata |
444 |
Q |
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| T |
25191211 |
tctcatttctcatagatgattcaacatgtacaagtagtatatata |
25191255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 1063740 - 1063694
Alignment:
| Q |
66 |
atctgtcttcaaaccaccttgcattaccatctatatgaagcttctga |
112 |
Q |
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||||| ||||||||||| || |||||||||||| ||||||||||||| |
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| T |
1063740 |
atctgccttcaaaccacattccattaccatctacatgaagcttctga |
1063694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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