View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809_low_10 (Length: 444)
Name: NF1809_low_10
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 4764976 - 4764537
Alignment:
| Q |
6 |
aaaagcagatacaacaccttttatctctaagaattaagatataaatgatagcaattgatcaaatcgtgaatcataggagaacataagagagataataaca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4764976 |
aaaagcagatacaacaccttttatctctaagaattaagatataaatgatagcaattgatcaaatcgtgagtcataggagaacataagagagataataaca |
4764877 |
T |
|
| Q |
106 |
ccttttgttcttgtaatgaaaatgtatatgatgcca--------------ggatcacgggatcataacatgatccgaggnnnnnnngaaagtggaagcac |
191 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4764876 |
ccttttgttcttgtaatg-aaatgtatatgatgccaattggaaaagaaagggatcacgggatcataacatgatccgaggaagaaaagaaagtggaagcac |
4764778 |
T |
|
| Q |
192 |
cttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaaccacagcagaatccctcacaaggtagcggcgacacgaaccct |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| | |||||| |
|
|
| T |
4764777 |
cttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaaccacaacagaatccctcacaagggagtggcgacgctaaccct |
4764678 |
T |
|
| Q |
292 |
aggagcggcggannnnnnnccagtcatataannnnnnnnataaaattcaaatcatttatttcttaatcgtccttttatctagaagtgtttgagtggcatt |
391 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4764677 |
aggagcggcggctttttttccagtgatataa-tttttttataaaattcaaatcatttatttcttaatcgtccttttatctagaagtgtttgagtggcatt |
4764579 |
T |
|
| Q |
392 |
ttgaatatgttaggttttcccactccccagtttaccaatatt |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4764578 |
ttgaatatgttaggttttcccactccccagtttaccaatatt |
4764537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 4670441 - 4670407
Alignment:
| Q |
345 |
atttatttcttaatcgtccttttatctagaagtgt |
379 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
4670441 |
atttatttcttaattgtccttttatctagaagtgt |
4670407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 19061253 - 19061338
Alignment:
| Q |
218 |
aaaacgttaagaggagcagatatctcaccaaaccacagcagaatccctcacaagg-tagcggcgacacgaaccctaggagcggcgg |
302 |
Q |
| |
|
|||||||| || |||| ||| |||||| | ||| || ||| |||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
19061253 |
aaaacgttcaggggagaagaaatctcaacgaacgacggcaaaatccctcacaagggtagcggcggcaagaaccctaggagcggcgg |
19061338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University