View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_15 (Length: 400)
Name: NF1809_low_15
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 6792787 - 6792414
Alignment:
| Q |
15 |
acaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacccaatttgatgaagcttaacttgaccataaa |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6792787 |
acaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagcttaacttgaccataaa |
6792688 |
T |
|
| Q |
115 |
caccttcaaatattccagttccaccggtcacagccaaataagtatcctc---ataagttaaataagaaccttgcacagaaatatgaccatagtctccaaa |
211 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6792687 |
caccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatatgaccatactctccaaa |
6792588 |
T |
|
| Q |
212 |
ataaaaactatatattgcttcatatatgtcaccttttttctctgctttgttttgaatcaaaacacatattccagctgttattcctaccctcttttgtaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6792587 |
ataaaaactatatattgcttcatatatgtccccttttttctctgctttgttttgaatcaaaacacatattccagctgttattcctaccctcttttgtaaa |
6792488 |
T |
|
| Q |
312 |
catcctgagtacaactgcaaattccataaccccaaaatcaaataaattcctttacctttattctaattctatat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6792487 |
catcctgagtacaactgcaaattccataaccccaaaatcaaataaattcctttacctttatcctaattctatat |
6792414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 6800258 - 6799925
Alignment:
| Q |
15 |
acaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacccaatttgatgaagcttaacttgaccataaa |
114 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
6800258 |
acaagaaattcatgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaa |
6800159 |
T |
|
| Q |
115 |
caccttcaaatattccagttccaccggtcacagccaaataagtatcctcataagttaaataagaaccttgcacagaaatatgaccatagtctccaaaata |
214 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
6800158 |
caccttcaaatattccagttccaccagttacaaccaagtaagtatcctcataagttaaataagaaccttgtacataaatatgaccatagtctccaaaata |
6800059 |
T |
|
| Q |
215 |
aaaactatatattgcttcatatatgtcaccttttttctctgctttgttttgaatcaaaacacatattccagctgttattcctaccctcttttgtaaacat |
314 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
6800058 |
aaaactgtatattgcttcatatatgtccccttttttctctgctttgttttgaattaaaacacatattccagctgttattcccaccctcttttgtaagcat |
6799959 |
T |
|
| Q |
315 |
cctgagtacaactgcaaattccataaccccaaaa |
348 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||| |
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|
| T |
6799958 |
cctgagtacaactgcacattccacacccccaaaa |
6799925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 25914585 - 25914864
Alignment:
| Q |
16 |
caagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacccaatttgatgaagcttaacttgaccataaac |
115 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||||| ||||||||| ||||| ||||| || ||| |
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| T |
25914585 |
caagaagctcttgtggcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaac |
25914684 |
T |
|
| Q |
116 |
accttcaaatattccagttccaccggtcacagccaaataagtatcctcataagttaaataagaaccttgcacagaaatatgaccatagtctccaaaataa |
215 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||| | ||| || |||||||| |||| |||| |||||||||| || |||||||||||||||| | | |
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| T |
25914685 |
accttcaaaaattccagtaccaccagtcacagttagatatgtgtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctccaacgtga |
25914784 |
T |
|
| Q |
216 |
aaactatatattgcttcatatatgtcaccttttttctctgctttgttttgaatcaaaacacatattccagctgttattcc |
295 |
Q |
| |
|
||||| || |||||||||||| ||||||| | || |||||||||| ||||||||| | || || |||||||||||||| |
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|
| T |
25914785 |
aaactgtagattgcttcatatctgtcaccatacttttctgctttgtgttgaatcaatatgcaaataccagctgttattcc |
25914864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 5689901 - 5690149
Alignment:
| Q |
16 |
caagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacccaatttgatgaagcttaacttgaccataaac |
115 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| |||||||||| | ||| |||||||| | ||| |
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|
| T |
5689901 |
caagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaac |
5690000 |
T |
|
| Q |
116 |
accttcaaatattccagttccaccggtcacagccaaataagtatcctc---ataagttaaataagaaccttgcacagaaatatgaccatagtctccaaaa |
212 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| | |||||| ||||| ||| |||||||| | ||||| || | | |||||||| || |||||| |
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|
| T |
5690001 |
accttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatcaccaaaa |
5690100 |
T |
|
| Q |
213 |
taaaaactatatattgcttcatatatgtcaccttttttctctgctttgt |
261 |
Q |
| |
|
| ||||| || |||||||||||| | |||||||| || || ||||||| |
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| T |
5690101 |
tggaaactgtagattgcttcatatctatcacctttcttttcagctttgt |
5690149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 253
Target Start/End: Complemental strand, 22227549 - 22227350
Alignment:
| Q |
54 |
taaaatgtgtaaaatatcttaaatggaaacccaatttgatgaagcttaacttgaccataaacaccttcaaatattccagttccaccggtcacagccaaat |
153 |
Q |
| |
|
||||| ||||| || | ||||||||| ||| ||| ||| ||||| |||||||| ||||||||||||||||| ||||||| ||||| || | ||| | || |
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|
| T |
22227549 |
taaaaagtgtagaacagcttaaatgggaacacaagttgttgaagtttaacttgtccataaacaccttcaaagattccagaaccacctgttatagcaagat |
22227450 |
T |
|
| Q |
154 |
aagtatcctcataagttaaataagaaccttgcacagaaatatgaccatagtctccaaaataaaaactatatattgcttcatatatgtcaccttttttctc |
253 |
Q |
| |
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| || || | || || | ||||| ||||| || || |||||||||||||||||||| || || || || |||||||||||| | ||||| |||||||| |
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|
| T |
22227449 |
atgtgtcttggtatgtgagataaggtccttgtactgatatatgaccatagtctccaaagtagaagctgtaaattgcttcatatctatcaccctttttctc |
22227350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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