View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_16 (Length: 398)
Name: NF1809_low_16
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_16 |
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| [»] scaffold0864 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 40 - 284
Target Start/End: Original strand, 5444299 - 5444543
Alignment:
| Q |
40 |
tgaagaaagttccaaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaatagtgaagtccgggta |
139 |
Q |
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| T |
5444299 |
tgaagaaagttccaaaaaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaatagtgaagtccgggta |
5444398 |
T |
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| Q |
140 |
atttcattcaacaactacttcttttcagattttcaagtaggccaaaaaggcccagagtttgaatgacaccaagcaacttgcagcttggtctttctcttaa |
239 |
Q |
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| T |
5444399 |
atttcattcaacaactacttcttttcagattttcaagtaggccaaaaaggcccagagtttcaatgacaccaagcaacttgcagcttggtctttctcttaa |
5444498 |
T |
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| Q |
240 |
cttgtatggactaatttgctagtaagcgatataatttaaggacta |
284 |
Q |
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| T |
5444499 |
cttgtatggactaatttgctagtaagcgatataatttaaggacta |
5444543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 5331673 - 5331573
Alignment:
| Q |
52 |
caaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaatagtgaagtccgggtaatttcattcaac |
151 |
Q |
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| T |
5331673 |
caaacgaggagcaattggtgcaaagttggagagaggctcttcgtcatgcagctaacataaaagggtttgaaatactcaagtcacggtaaattcattcaac |
5331574 |
T |
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| Q |
152 |
a |
152 |
Q |
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| T |
5331573 |
a |
5331573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 4676 - 4764
Alignment:
| Q |
62 |
gaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaatagtgaagtccgggtaatttcattcaa |
150 |
Q |
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| T |
4676 |
gaaattggtgcaaaattggagagaggatcttcgtcaggcagctagcattgcagggtttgaaatactcaagtcacggtaatttcattcaa |
4764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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