View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809_low_17 (Length: 394)
Name: NF1809_low_17
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 33854376 - 33854684
Alignment:
| Q |
17 |
ttcaaacttctatctaaatgcagtatatacttgctagagcacaatttaaaagttttctatttagaaaccgatttaaatcgttcactaaatgaattagttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33854376 |
ttcaaacttctatctaaatgcagtatatacttgctagagcacaatttaaaagttttctatttagaaaccgatttaaatcgttcactaaatgaattagttt |
33854475 |
T |
|
| Q |
117 |
ctgatataaagtctaattttttaaagtctctaaattgatcaccattcaccagtggcttattagcgatcaatttgacatttggaatgtctaaattaatgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33854476 |
ctgatataaagtctaattttttaaagtctctaaattga-------tcaccagtggcttattagcgatcaatttgacatttggaatgtctaaattaatgaa |
33854568 |
T |
|
| Q |
217 |
caaatatgaatactaaaacattaaaatcattga-nnnnnnnnnnaagcaaacttttttattaatgagattataaaaaagtaatccttacagcaaaagtaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33854569 |
caaatatgaatactaaaacattaaaatcattgatttttttttttaagcaaacttttttattaatgagattataaaaaagtaatccttacagcaaaagtaa |
33854668 |
T |
|
| Q |
316 |
tccgaattcatcagta |
331 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33854669 |
tccgaattcatcagta |
33854684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 33756613 - 33756700
Alignment:
| Q |
162 |
tcaccagtggcttattagcgatcaatttgacatttggaatgtctaaattaatgaacaaatatgaatactaaaacattaaaatcattga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||| ||| ||||||||||||||||||||| |
|
|
| T |
33756613 |
tcaccagtggcttattagcgatcaatttgacatttgcaatatctaaattaatcaataaatagcaatgctaaaacattaaaatcattga |
33756700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 33756513 - 33756582
Alignment:
| Q |
17 |
ttcaaacttctatctaaatgcagtatatacttgctagagcacaatttaaaagttttctatttagaaaccgattta |
91 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33756513 |
ttcaaacttctatctaaat-----atatacttgctagaacacaatttaaaagttttctatgtagaaaccgattta |
33756582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University