View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_18 (Length: 384)
Name: NF1809_low_18
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 38822303 - 38821940
Alignment:
| Q |
17 |
atatttctaacgacacagactatgaggtcagaaggatcatgcatccagaggttatttggatatagaaaaaagaattatttgtcctaccagtgccacttgt |
116 |
Q |
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| T |
38822303 |
atatttctaacgacacagactatgaggtcagaaggatcatgcatccagaggttatttggatatagaaaaaagaattatttgtcctaccagtgccacttgt |
38822204 |
T |
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| Q |
117 |
ttgtctaaactgatggtccgtttagtcaagtactaacgataagattattaattgattaaaggaccaagacattataatacaatctta---ttatatgaaa |
213 |
Q |
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| T |
38822203 |
ttgtctaaactgatggtccgtttagtcaagtactaacgataagattattaattgattaaaggaccaagacattataatacaatcttattattatatgaaa |
38822104 |
T |
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| Q |
214 |
ttcatcacatggttgatagtatcttcaggtaggaaggtgaaacattgaacttcaacagtttatccatattgtcttacgtcatggttcttagatactgaaa |
313 |
Q |
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| T |
38822103 |
ttcatcacgtggttgatagtatcttcaggtaggaaggtgaaacattgaacttcaacagtttatccatattgtcttacgtcatggttcttagatactgaaa |
38822004 |
T |
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| Q |
314 |
tagaactttggtggcttttttaattttgaaatctttgttattgatgtcaattggaatattcttc |
377 |
Q |
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| T |
38822003 |
tagaactttggtggctttttaaattttgcaatctttgttattgatgtcaattggaatattcttc |
38821940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 38809213 - 38809150
Alignment:
| Q |
70 |
atttggatatagaaaaaagaattatttgtcctaccagtgccacttgtttgtctaaactgatggtc |
134 |
Q |
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| T |
38809213 |
atttggatatagaaaaat-aaccatttgtcctaccggtgccacttgtttgtctaaactaatggtc |
38809150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 38809309 - 38809270
Alignment:
| Q |
21 |
ttctaacgacacagactatgaggtcagaaggatcatgcat |
60 |
Q |
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| T |
38809309 |
ttctaacgagacagattatgaggtcagaaggatcatgcat |
38809270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 35521716 - 35521768
Alignment:
| Q |
323 |
ggtggcttttttaattttgaaatctttgttattgatgtcaattggaatattct |
375 |
Q |
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| T |
35521716 |
ggtgtcttttttgattttgaaatatttgctatcaatgtcaattggaatattct |
35521768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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