View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809_low_19 (Length: 363)

Name: NF1809_low_19
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809_low_19
NF1809_low_19
[»] chr3 (5 HSPs)
chr3 (34-348)||(33095925-33096233)
chr3 (118-172)||(40878226-40878280)
chr3 (101-161)||(54923500-54923560)
chr3 (118-172)||(51053649-51053703)
chr3 (140-172)||(31812266-31812298)
[»] chr5 (3 HSPs)
chr5 (101-172)||(22792153-22792224)
chr5 (101-172)||(26526527-26526598)
chr5 (123-172)||(13542847-13542895)
[»] chr4 (6 HSPs)
chr4 (89-172)||(13849357-13849441)
chr4 (101-172)||(22988034-22988105)
chr4 (101-172)||(22717112-22717183)
chr4 (123-172)||(27031857-27031906)
chr4 (125-169)||(15540061-15540105)
chr4 (89-156)||(46343330-46343398)
[»] chr1 (5 HSPs)
chr1 (89-172)||(7204551-7204635)
chr1 (101-156)||(236584-236639)
chr1 (101-156)||(11064322-11064377)
chr1 (118-169)||(40685560-40685611)
chr1 (111-169)||(29511132-29511190)
[»] chr8 (7 HSPs)
chr8 (96-172)||(3728369-3728444)
chr8 (101-156)||(11098133-11098187)
chr8 (118-172)||(4312164-4312218)
chr8 (103-157)||(31291235-31291289)
chr8 (118-172)||(36442337-36442391)
chr8 (118-172)||(43149421-43149474)
chr8 (111-172)||(37817400-37817461)
[»] chr7 (3 HSPs)
chr7 (85-172)||(24333338-24333426)
chr7 (101-172)||(6328217-6328288)
chr7 (101-158)||(35289860-35289917)
[»] chr2 (2 HSPs)
chr2 (101-172)||(39417457-39417527)
chr2 (135-172)||(22999123-22999160)
[»] scaffold0027 (1 HSPs)
scaffold0027 (89-169)||(19359-19440)
[»] chr6 (1 HSPs)
chr6 (118-171)||(31242034-31242087)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 34 - 348
Target Start/End: Original strand, 33095925 - 33096233
Alignment:
Q  34 tattgtggcttctgatatatgttttcttgttattagagaagagnnnnnnnngtcacataagtccaga-tcaactgacaaaaattacgaatttgttaggtc 132  Q
    ||||||||||||| |||||||||||||||||||||||||||||        |||||||||||||  | ||||||| ||||||| ||||| |||||||| |    
T  33095925 tattgtggcttctaatatatgttttcttgttattagagaagagctttttt-gtcacataagtcctaactcaactggcaaaaatgacgaaattgttaggcc 33096023  T
Q  133 gaacgtcatgactggggttcgaactccgacacctccacttnnnnnnnnnnnnnnnnagtttacgatgacttatgttactcaagtggtagtaagtaaggta 232  Q
    ||||||||||| |||||||| |||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||    
T  33096024 gaacgtcatgattggggttcaaactccgacacctccactttgtgtgtgtg------agtttacgatgacttatgttactcaagtggtagtaagtaaggta 33096117  T
Q  233 agacactattcaaggaagaaaacatacctatgttctccgaaagtttgttggagctatagatttcttcttctcgttatagatgtttacactctgaaccatt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33096118 agacactattcaaggaagaaaacatacctatgttctccgaaagtttgttggagctatagatttcttcttctcgttatagaagtttacactctgaaccatt 33096217  T
Q  333 ttgatttgcatatttt 348  Q
    ||||||||||||||||    
T  33096218 ttgatttgcatatttt 33096233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 40878280 - 40878226
Alignment:
Q  118 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||| ||||||||||||||||||||| || ||||||||| |||| ||||||||||    
T  40878280 cgaaattgttaggtcgaacgtcatgattgaggttcgaaccccgatacctccactt 40878226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 54923500 - 54923560
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccga 161  Q
    |||||||  ||||||  |||| ||||||||||| |||||||||| ||||||||||||||||    
T  54923500 tcaactggtaaaaatgtcgaaattgttaggtcggacgtcatgaccggggttcgaactccga 54923560  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 51053649 - 51053703
Alignment:
Q  118 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||| |||||||||||||||||||||  ||||||||||| |||||| || |||||    
T  51053649 cgaaattgttaggtcgaacgtcatgatcggggttcgaaccccgacaacttcactt 51053703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 31812266 - 31812298
Alignment:
Q  140 atgactggggttcgaactccgacacctccactt 172  Q
    ||||| |||||||||||||||||||||||||||    
T  31812266 atgaccggggttcgaactccgacacctccactt 31812298  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 22792224 - 22792153
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||||| |||||||  |||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  22792224 tcaactggcaaaaatgccgaaattgttaggtcggacgtcttgacaggggttcgaaccccgacacctccactt 22792153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 26526527 - 26526598
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||||| |||||||  |||| |||||||| ||||||||||||| | |||||||||||||  ||||||||||    
T  26526527 tcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactt 26526598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 13542895 - 13542847
Alignment:
Q  123 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||||||| | |||||||||| ||| |||||||||||||||||||||||    
T  13542895 ttgttaggttggacgtcatgaccggg-ttcgaactccgacacctccactt 13542847  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 13849357 - 13849441
Alignment:
Q  89 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||||||| || |||||||||||||||  |||| ||||||||||  ||||| |||  ||||||||||| |||||||||||||||    
T  13849357 cataagtcctagctcaactgacaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactt 13849441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 22988105 - 22988034
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||| |||||||||  |||| ||||||||||||||||||||||| | |||||||| |||| ||||| ||||    
T  22988105 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgactagagttcgaaccccgatacctctactt 22988034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 22717112 - 22717183
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||| |||||||||  |||| ||||||||||||||||||||| | | |||||||| |||| ||||| ||||    
T  22717112 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgattagagttcgaaccccgatacctctactt 22717183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 27031906 - 27031857
Alignment:
Q  123 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||| |||||| |||||||||| | ||||||||||||||||||| |||||    
T  27031906 ttgtcaggtcgtacgtcatgaccgtggttcgaactccgacaccttcactt 27031857  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 15540061 - 15540105
Alignment:
Q  125 gttaggtcgaacgtcatgactggggttcgaactccgacacctcca 169  Q
    |||||||||||||| |||| ||||||||||||| || ||||||||    
T  15540061 gttaggtcgaacgttatgattggggttcgaacttcggcacctcca 15540105  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 46343330 - 46343398
Alignment:
Q  89 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 156  Q
    ||||||||| || ||||||||||||| |  |||| |||||||| || |||||||||| |||||||||||    
T  46343330 cataagtcctagctcaactgacaaaagtgccgaaattgttaggccggacgtcatgaccggggttcgaac 46343398  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 7204635 - 7204551
Alignment:
Q  89 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||||||| || ||||||| |||||||  |||| |||||||| ||||| ||||||| ||||||||||| |||| ||||||||||    
T  7204635 cataagtcctagctcaactggcaaaaatgccgaaattgttaggccgaacatcatgaccggggttcgaaccccgatacctccactt 7204551  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 236584 - 236639
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 156  Q
    |||||||||||||||  |||| |||||||| || |||||||||| |||||||||||    
T  236584 tcaactgacaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaac 236639  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 11064377 - 11064322
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 156  Q
    |||||||| ||||||  ||||||| ||| |||||||| ||||||||||||||||||    
T  11064377 tcaactgataaaaatgtcgaatttattaagtcgaacgccatgactggggttcgaac 11064322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 40685560 - 40685611
Alignment:
Q  118 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 169  Q
    |||| ||||||||||| | |||||||| |||||||||||||||| |||||||    
T  40685560 cgaaattgttaggtcggatgtcatgaccggggttcgaactccgatacctcca 40685611  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 29511132 - 29511190
Alignment:
Q  111 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 169  Q
    ||||| ||||| |||||||| |||| |||||||| ||||||||||| |||| |||||||    
T  29511132 aaaatgacgaaattgttaggccgaatgtcatgaccggggttcgaaccccgatacctcca 29511190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 3728444 - 3728369
Alignment:
Q  96 ccagatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||| |||||||||||||  | |||| ||||||||||| | ||||||| |||||||||||| |||| ||||||||||    
T  3728444 ccagctcaactgacaaaatat-cgaaattgttaggtcggatgtcatgattggggttcgaaccccgatacctccactt 3728369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 11098187 - 11098133
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 156  Q
    |||||||||||||  | |||| ||||||||||||| ||||||||||||||||||||    
T  11098187 tcaactgacaaaatat-cgaaattgttaggtcgaatgtcatgactggggttcgaac 11098133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 4312164 - 4312218
Alignment:
Q  118 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||| ||||||||||| | | ||||||||||||||||||||||  ||||||||||    
T  4312164 cgaaattgttaggtcggatgccatgactggggttcgaactccggtacctccactt 4312218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 31291235 - 31291289
Alignment:
Q  103 aactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaact 157  Q
    |||||||||||||  |||| |||||||| ||||||||||||  ||||||||||||    
T  31291235 aactgacaaaaatgccgaaattgttaggccgaacgtcatgatcggggttcgaact 31291289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 36442337 - 36442391
Alignment:
Q  118 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||| ||||||||||| | ||||||| ||||||||||||||||  ||||||||||    
T  36442337 cgaaattgttaggtcggatgtcatgattggggttcgaactccggtacctccactt 36442391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 43149474 - 43149421
Alignment:
Q  118 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||| ||||||||||| ||||||| |||  |||||||||||||||||||||||||    
T  43149474 cgaaattgttaggtcggacgtcat-actaaggttcgaactccgacacctccactt 43149421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 37817400 - 37817461
Alignment:
Q  111 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||| ||||| ||||||||||| | | |||||| ||||||||||| |||| ||||||||||    
T  37817400 aaaatgacgaaattgttaggtcggatgccatgaccggggttcgaaccccgatacctccactt 37817461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 24333338 - 24333426
Alignment:
Q  85 gtcacataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||||||||||| || |||||| ||||||||  |||| |||||||| ||| ||||||||  ||||||||||||||   ||||||||||    
T  24333338 gtcacataagtcctagctcaacttacaaaaatgtcgaaattgttaggccgagcgtcatgatcggggttcgaactccagtacctccactt 24333426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 6328288 - 6328217
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    ||||||| |||||||  | || ||||||||| | ||||||||||| |||||||||| |||| ||||||||||    
T  6328288 tcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcgaaccccgatacctccactt 6328217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 35289860 - 35289917
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactc 158  Q
    |||||||||||||||   ||| ||||||||||  ||||||||| ||||||||||||||    
T  35289860 tcaactgacaaaaatgctgaaattgttaggtcagacgtcatgattggggttcgaactc 35289917  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 39417457 - 39417527
Alignment:
Q  101 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||||||||||||||  |||| |||||||| || | |||||||| |||||||||||||||| | ||||||||    
T  39417457 tcaactgacaaaaataccgaaattgttaggccggatgtcatgac-ggggttcgaactccgatatctccactt 39417527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 22999123 - 22999160
Alignment:
Q  135 acgtcatgactggggttcgaactccgacacctccactt 172  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  22999123 acgtcatgaccggggttcgaaccccgacacctccactt 22999160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 19440 - 19359
Alignment:
Q  89 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 169  Q
    ||||||||| || ||||||| |||||||   ||| |||||||| || ||||||||| |||||||||||| |||| |||||||    
T  19440 cataagtcctagttcaactggcaaaaatgttgaaattgttaggccggacgtcatgattggggttcgaaccccgatacctcca 19359  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 31242087 - 31242034
Alignment:
Q  118 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccact 171  Q
    |||| |||||||| || |||||||||| ||||||||||  ||||||||||||||    
T  31242087 cgaaattgttaggccggacgtcatgaccggggttcgaatcccgacacctccact 31242034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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