View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_2 (Length: 818)
Name: NF1809_low_2
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 438 - 803
Target Start/End: Complemental strand, 45505277 - 45504912
Alignment:
| Q |
438 |
ttgatgtaatttaataaatcgtagttacaagtttgagagatatctttaactaagctagccccttcatatatgctccgaaggactaaactggaatcggaac |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
45505277 |
ttgatgtaatttaataaatcgtagttacaagtttgagagatatctttaactaagctagccccttcatacatgctccgaaggaccaaactggaatctgaac |
45505178 |
T |
|
| Q |
538 |
aaaaggtgagcgatattgcacgtcaacgtgcgctacaacattttgaaccggtgactcctccctaccacaagcagagcacaccagctcattagaaatctct |
637 |
Q |
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| T |
45505177 |
agaaggtgagcgatattgcacgtcagcgtgcgctacaacattttgaaccggtgactcctccctaccacaagcagagcacaccagctcattagaaatctct |
45505078 |
T |
|
| Q |
638 |
tgcacatcattgttagctaccggggatgaaggcgtagtagtcgtatcgagaactttgggaacatccatcacctccctcaattcctaactcatttgctcca |
737 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45505077 |
tgcacgtcattgttagctaccggggatgaacgcgtagtagtcgtatcgagaactttgggaacatccatcacctccctcgattcctaactcatttgctcca |
45504978 |
T |
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| Q |
738 |
ctacatcttaatgcacgtcaacatgccctactttgggaaccaattcaagcacatgaccttgtgtat |
803 |
Q |
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| T |
45504977 |
ctacatcttaatgcacgtcaacatgccctactttggaaaccaattcaaacacaggaccttgtgtat |
45504912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 29 - 290
Target Start/End: Complemental strand, 45505623 - 45505360
Alignment:
| Q |
29 |
tagaaccaaatcacaagaattaaaattagtattgctataatattaattagagccatgctatataaagtgaaaaaataaatcacgagattccacgaaaggt |
128 |
Q |
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| T |
45505623 |
tagaaccaaatcacaagaattaaaattagtattgctataatattaattagagccatgctatataaagtgaaaaaataaatcacgagattccacgaaaggt |
45505524 |
T |
|
| Q |
129 |
gtatttcagttaaacattaatccatt--acttccggtttttgtggcatacatgcaggcagttgtttatgtgcagctaaattacaccggtcgagatgaatt |
226 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45505523 |
gtatttcagttaaacattaatccattttacttccggtttttgtggcatacatgcaggcagtggtttatgtgcagctaaattacaccggtcgagatgaatt |
45505424 |
T |
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| Q |
227 |
agtgaaaaacatttcgctatacatagcatttcgctattaaatttgttaacagttttaattaatt |
290 |
Q |
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| T |
45505423 |
agtgaaaaacatttcgctatacatagcatttcgctattaaatttgttaacagttttaattaatt |
45505360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 314 - 418
Target Start/End: Complemental strand, 45505374 - 45505270
Alignment:
| Q |
314 |
cagttttaattaatttatcttctctttgataaaataataaaaaactatattctctattcatatatttattgcgttattacaatagagattaaataatttg |
413 |
Q |
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| T |
45505374 |
cagttttaattaatttatcttctctttgataaaataataaaaaactatattctctattcatatatttattgcgttattacaatagagattaaataatttg |
45505275 |
T |
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| Q |
414 |
atgta |
418 |
Q |
| |
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||||| |
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| T |
45505274 |
atgta |
45505270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 552 - 783
Target Start/End: Original strand, 18145122 - 18145353
Alignment:
| Q |
552 |
attgcacgtcaacgtgcgctacaacattttgaaccggtgactcctccctaccacaagcagagcacaccagctcattagaaatctcttgcacatcattgtt |
651 |
Q |
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||||||||||| | ||||||||| ||| ||||||||||||||||||||||||| |||| || | | || ||||||||||||| ||||||| ||| || |
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| T |
18145122 |
attgcacgtcagcatgcgctacatcatgttgaaccggtgactcctccctaccagaagctgaagaaatcaactcattagaaatcacttgcacgacatcgtg |
18145221 |
T |
|
| Q |
652 |
agctaccggggatgaaggcgtagtagtcgtatcgagaactttgggaacatccatcacctccctcaattcctaactcatttgctccactacatcttaatgc |
751 |
Q |
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|||| |||||||||| | ||| ||| | ||| |||||| |||||||||||| ||||||||| |||| ||||| | ||| |||||| || ||||| |
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| T |
18145222 |
cgctatcggggatgaaagtgtaacagttgcatcaagaactatgggaacatccaccacctcccttgattctagactcaactactctactacagctgaatgc |
18145321 |
T |
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| Q |
752 |
acgtcaacatgccctactttgggaaccaattc |
783 |
Q |
| |
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||||||| ||| |||||| ||||| |||||| |
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| T |
18145322 |
acgtcaatgtgcgctacttggggaatcaattc |
18145353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 44533334 - 44533144
Alignment:
| Q |
77 |
agagccatgctatataaagtgaaaaaataaatcacgagattccacgaaaggtgtatttcagttaaacattaatccatt--acttccggtttttgtggcat |
174 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||| |||||| | || |||||| | |||| ||||||||||||| |
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| T |
44533334 |
agagccatgctatataaatcgaaaaactaaatcacgagatttcacgaaagatgtatttctgttaaatactactccattttatttcctgtttttgtggcat |
44533235 |
T |
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| Q |
175 |
acatgcaggcagtt------gtttatgtgcagctaaattacaccggtcgagatgaattagtgaaaaacatttcgctatacatagcatttcg |
259 |
Q |
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|||| || |||| | |||||||||| |||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||| |
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| T |
44533234 |
acatacatgcaggtatagtggtttatgtgcggctaaattacactggtcgggatgaattcgtgaaaaacattttgctatacatagcatttcg |
44533144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 32670999 - 32671164
Alignment:
| Q |
78 |
gagccatgctatataaagtgaaaaaa-taaatcacgagattccacgaaaggtgtatttcagttaaacattaatccatt--acttccggtttttgtggcat |
174 |
Q |
| |
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|||| ||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
32670999 |
gagctatgctatataaagccaaaaaaataaatcactagattctacgaaaggtgtatttcagttaaacattaatccattttacttccgttttttgtgg--- |
32671095 |
T |
|
| Q |
175 |
acatgcaggcagttgtttatgtgcagctaaattacaccggtcgagatgaattagtgaaaaacatttcgctatacatagcatttc |
258 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
32671096 |
---------------tttatgtgcagctaaattacactggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttc |
32671164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 2304738 - 2304863
Alignment:
| Q |
82 |
catgctatataaagtgaaaaaataaatcacgagattccacgaaaggtgtatttcagttaaacattaatcca--ttacttccggtttttgtggcatacatg |
179 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| | |||| ||| ||||||||||| |||||| |||| |
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| T |
2304738 |
catgctatataaagcgaaaaaatacatcacgagattccacgaatagtgtatttgagttaaacatgattccattttatttccggtttttctggcattcatg |
2304837 |
T |
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| Q |
180 |
caggcagttgtttatgtgcagctaaa |
205 |
Q |
| |
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||| ||| || | ||||||| |||| |
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| T |
2304838 |
taggtagtggtgtgtgtgcagttaaa |
2304863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 17336172 - 17336063
Alignment:
| Q |
153 |
ttacttccggtttttgtggcatacatgcaggcagttgtttatgtgcagctaaattacaccggtcgagatgaattagtgaaaaacatttcgctatacatag |
252 |
Q |
| |
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|||||| |||||||| ||||||||||| ||| || |||||||| || ||||||||||| ||| ||||||| ||| |||| |||||||||||||||| |
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| T |
17336172 |
ttactttcggtttttatggcatacatgtaggtggtggtttatgttcatctaaattacactattcgctatgaattcgtg-aaaatatttcgctatacatag |
17336074 |
T |
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| Q |
253 |
catttcgctat |
263 |
Q |
| |
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|||||| |||| |
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| T |
17336073 |
catttcactat |
17336063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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