View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_20 (Length: 363)
Name: NF1809_low_20
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 8209739 - 8209409
Alignment:
| Q |
15 |
ttatagtaactttgtagtttgtttgttatctcaatttatcataatttattattatttcaaaagtttaatgagccgtttcctctaaaaaatatgaaagaat |
114 |
Q |
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| T |
8209739 |
ttatagtaactttgtagtttgtttgttatctcaatttgtcataatttattattatttcaaaagtttaatgagccgtttcccctaaaaaataagaaagaat |
8209640 |
T |
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| Q |
115 |
tttaatgagtccgttataatgttgcactcttcgcggcacaaataaaaaacgataccaacnnnnnnnnnnnnngtgttctcatttcggttacgaattgaag |
214 |
Q |
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| T |
8209639 |
tttaatgagtccgttataatgttgcactcttcgcggcacaaataaaaaacgataccaacctctctctctc--gtgttctcaattcggttacgaattgaag |
8209542 |
T |
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| Q |
215 |
aacaacaacaataacaatgtcatcatcggaggaagagaagctgttaaaggaagcgaagaaacttgcatgggaggatcgtctttctcacaagaactggaaa |
314 |
Q |
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| T |
8209541 |
aacaacaacaataacaatgtcatcatcggaggaagagaagctgttaaaggaagcgaagaaacttgcatgggaggatcgtctttctcacaagaactggaaa |
8209442 |
T |
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| Q |
315 |
gtcagaaatgacgccaatatagatttagcttct |
347 |
Q |
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| T |
8209441 |
gtcagaaatgacgccaatatcgatttagcttct |
8209409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 42365346 - 42365236
Alignment:
| Q |
237 |
tcatcggaggaagagaagctgttaaaggaagcgaagaaacttgcatgggaggatcgtctttctcacaagaactggaaagtcagaaatgacgccaatatag |
336 |
Q |
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| T |
42365346 |
tcatcagaggaagaaaagttgttgaaggaagcaaagaaacttccatgggaggatcgtctttctcacaaaaactggaaagtgcgaaatgaagccaatattg |
42365247 |
T |
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| Q |
337 |
atttagcttct |
347 |
Q |
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| T |
42365246 |
atctggcttct |
42365236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 3579560 - 3579626
Alignment:
| Q |
246 |
gaagagaagctgttaaaggaagcgaagaaacttgcatgggaggatcgtctttctcacaagaactggaa |
313 |
Q |
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| T |
3579560 |
gaagagaacttgttaaaggaagcaaataaacttccatgggaggatcgtctctc-cacaagaattggaa |
3579626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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