View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_21 (Length: 351)
Name: NF1809_low_21
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1505304 - 1505143
Alignment:
| Q |
1 |
tttagtctcgaaccttcaaaaatataaaatttcatttgataaaataggttcaaattatactatttttgaattaaaattaatatttaactaatattgtttc |
100 |
Q |
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| T |
1505304 |
tttagtctcaaaccttcaaaaatataaaatttcatttgataaaataggctcaaattctactatttttgaattaaaattaatatgtaactaatattgtttc |
1505205 |
T |
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| Q |
101 |
aatcctttcaacnnnnnnnncccttcaaacaaaatcctctagaaggaaaaactaatatttttt |
163 |
Q |
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| T |
1505204 |
aatcctttcaac-aaaaaaacccttcaaacaaaatcctctagaaggaaaaactaatatttttt |
1505143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 1505073 - 1504968
Alignment:
| Q |
227 |
gattattaccattaacctaaaaataaggtaacataccagaaagatacctgttgacgacggatatataaatttcatgatattaatcattgatcatcacatg |
326 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1505073 |
gattattactattaacctaaaaataaggtaacataccagaaagatacctgttgacgacggatatataaatttcatgatattaatcattgatcatcacatg |
1504974 |
T |
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| Q |
327 |
ttgtac |
332 |
Q |
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|||||| |
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| T |
1504973 |
ttgtac |
1504968 |
T |
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