View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_24 (Length: 337)
Name: NF1809_low_24
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 43377837 - 43377524
Alignment:
| Q |
11 |
cagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatag |
110 |
Q |
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| T |
43377837 |
cagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatag |
43377738 |
T |
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| Q |
111 |
agacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattg |
210 |
Q |
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| T |
43377737 |
agacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattctatttgtttctttccaatacctccattg |
43377638 |
T |
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| Q |
211 |
aacatgagaaaccttctttcaagtccaaccaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctctgatgttt |
310 |
Q |
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| T |
43377637 |
aacatgagaaaccttctttcaagtccaactaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctccgatgttt |
43377538 |
T |
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| Q |
311 |
tatgatgatctttt |
324 |
Q |
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| T |
43377537 |
tatgatgatctttt |
43377524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 281
Target Start/End: Complemental strand, 34428800 - 34428556
Alignment:
| Q |
37 |
tatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaacaaaccacaactt |
136 |
Q |
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| T |
34428800 |
tatctgtgtatcaaattcatcacttcatcacaattccacagtagcgcctcctcggatgttgcacaaggatctagaggcagatggcatgtgacaaccactt |
34428701 |
T |
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| Q |
137 |
tttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaaccttctttcaagtcc |
236 |
Q |
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| T |
34428700 |
tctgtttcaatttggttgcatcctggagaataccatccaaccattccatctgttcctttccaacacctccgttaaacataagaaaccttctttcaagccc |
34428601 |
T |
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| Q |
237 |
aaccaaacctgttggactattcttatcttcatttggattcttctc |
281 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
34428600 |
ctttaaattatttggactattcttatcttcatttggattcttctc |
34428556 |
T |
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