View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_25 (Length: 314)
Name: NF1809_low_25
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 43295390 - 43295109
Alignment:
| Q |
16 |
ctcgagaggactatttgttgtgttagagagacgagtatatgattaaggatgacaaccgacaatatatttggattgagaaagaaggtaacttggagagagt |
115 |
Q |
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| T |
43295390 |
ctcgagaggactatttgttgtattagagagacgagtatatgattaaggatgacaaccgacaatatatttggattgagaaagaaggtaacttggagagaac |
43295291 |
T |
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| Q |
116 |
aaggagcgtcaattctcaagaaatgtcgaaaagcattgaaatcttcgtgcaagattaaacgagaatacttcatttgaaaaatcttgttctttgagnnnnn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43295290 |
aaggagcgtcaattctcaagaaatgtcgaaaagcatcgaaatcttcgtgcaagattaaacgagaatacttcatttgaaaaatcttgttctttgagttttt |
43295191 |
T |
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| Q |
216 |
nnacaaaagaaatattatttcaacttccttgcaatatcataaaagtcatttttatggtttatatttttcttcgccgtaacat |
297 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43295190 |
ttacaaaagaaatattatttcaacttccttgcagtatcttaaaagtcatttttatggtttatatttttcttcgccgtaacat |
43295109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 22435654 - 22435691
Alignment:
| Q |
250 |
tatcataaaagtcatttttatggtttatatttttcttc |
287 |
Q |
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| T |
22435654 |
tatcataaaagtcatttttatggtttatatttttcttc |
22435691 |
T |
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