View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809_low_26 (Length: 302)

Name: NF1809_low_26
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809_low_26
NF1809_low_26
[»] chr4 (4 HSPs)
chr4 (14-283)||(2206969-2207246)
chr4 (147-204)||(4243418-4243475)
chr4 (147-202)||(9064262-9064317)
chr4 (167-230)||(33843762-33843825)
[»] chr8 (2 HSPs)
chr8 (147-271)||(26100076-26100200)
chr8 (147-202)||(13384653-13384708)
[»] chr3 (3 HSPs)
chr3 (147-231)||(46853504-46853588)
chr3 (147-223)||(40147828-40147904)
chr3 (147-199)||(35058392-35058445)
[»] chr2 (2 HSPs)
chr2 (147-230)||(44439285-44439368)
chr2 (147-202)||(3352107-3352162)
[»] chr6 (5 HSPs)
chr6 (147-202)||(1485145-1485200)
chr6 (147-219)||(31305829-31305901)
chr6 (149-231)||(34620919-34621001)
chr6 (149-231)||(34748356-34748438)
chr6 (151-197)||(34898731-34898777)
[»] chr1 (4 HSPs)
chr1 (147-202)||(6021835-6021890)
chr1 (153-202)||(24587949-24587998)
chr1 (147-202)||(10324937-10324992)
chr1 (150-199)||(7790644-7790693)
[»] chr5 (1 HSPs)
chr5 (151-202)||(42858143-42858194)
[»] scaffold0361 (1 HSPs)
scaffold0361 (149-231)||(14084-14166)
[»] chr7 (1 HSPs)
chr7 (147-199)||(41788347-41788399)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 2206969 - 2207246
Alignment:
Q  14 cacagaatcaaacacacacttaattgaaacaatacaacaatttcacaagcccagttagatatatactcaaaagaaaaaggaca--------gagggtaaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  2206969 cacagaatcaaacacacacttaattgaaacaatacaacaatttcacaagcccagttagatatatactcaaaagaaaaaggacataaggagagagggtaaa 2207068  T
Q  106 attaactctactggagagcattcagacgtgttaaattctaatttgattctataattgatttcaacactccaatttatggttcaactcacttttacatcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2207069 attaactctactggagagcattcagacgtgttaaattctaatttgattctataattgatttcaacactccaatttatggttcaactcacttttacatcat 2207168  T
Q  206 tacatccgaacatagatcactttaccattaagtcgcttttaaccagaatcacttctacataatcaaatcactcaaatt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2207169 tacatccgaacatagatcactttaccattaagtcgcttttaaccagaatcaattctacataatcaaatcactcaaatt 2207246  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 4243418 - 4243475
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacatca 204  Q
    |||||||||| |||||||||  |||||| ||||||| |||| ||||||||||||||||    
T  4243418 tttgattctagaattgatttttacactcaaatttattgttctactcacttttacatca 4243475  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 9064262 - 9064317
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    |||||||||| |||||||||  |||||| | |||| ||||||||||||||||||||    
T  9064262 tttgattctagaattgattttcacactcaagtttacggttcaactcacttttacat 9064317  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 33843762 - 33843825
Alignment:
Q  167 caacactccaatttatggttcaactcacttttacatcattacatccgaacatagatcactttac 230  Q
    |||||||| ||||||| |||||||||||| |||||| | || |||| |||||| ||||||||||    
T  33843762 caacactcgaatttattgttcaactcactattacatgaatatatccaaacataaatcactttac 33843825  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 26100200 - 26100076
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacatagatcactttaccattaagtcgctttta 246  Q
    ||||||||||||||||||||  |||| | ||||||||||||||||||||||||||| | | ||||| |||| | ||  ||||||| | || ||| |||||    
T  26100200 tttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgttttta 26100101  T
Q  247 accagaatcacttctacataatcaa 271  Q
      |||||||| || |||||||||||    
T  26100100 gtcagaatcaattttacataatcaa 26100076  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 13384708 - 13384653
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    |||||||||| |||||||||  |||| | ||||||| |||||||||||||||||||    
T  13384708 tttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 46853588 - 46853504
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacatagatcactttacc 231  Q
    |||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| | || ||||  ||||| |||||||||||    
T  46853588 tttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttacc 46853504  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 40147904 - 40147828
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacatagatc 223  Q
    |||||||||| ||||||||||||||||  |||||||  |||||||||||||||||| | |  |||| ||||||||||    
T  40147904 tttgattctagaattgatttcaacacttgaatttatcattcaactcacttttacattaatgtatccaaacatagatc 40147828  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 35058392 - 35058445
Alignment:
Q  147 tttgattctataattgatttcaacactccaat-ttatggttcaactcactttta 199  Q
    |||||||||| ||||||||| ||||||| ||| |||| ||||||||||||||||    
T  35058392 tttgattctagaattgattttaacactcaaatattattgttcaactcactttta 35058445  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 44439285 - 44439368
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacatagatcactttac 230  Q
    |||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| |  | |||| |||||| ||||||||||    
T  44439285 tttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaatcactttac 44439368  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 3352107 - 3352162
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    ||||||||||||||||||||  |||| | |||||||| ||||||| ||||||||||    
T  3352107 tttgattctataattgattttcacacacaaatttatgtttcaacttacttttacat 3352162  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 1485200 - 1485145
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    |||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||    
T  1485200 tttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 1485145  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 31305901 - 31305829
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacata 219  Q
    |||||||||| |||||||||  |||||| ||||||| | ||||||||||||||||| | || |||| ||||||    
T  31305901 tttgattctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaacata 31305829  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 34620919 - 34621001
Alignment:
Q  149 tgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacatagatcactttacc 231  Q
    |||||||| |||||||||  |||||  |||||||  |||||||||||||||||| | |  |||| |||||| |||||||||||    
T  34620919 tgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttacc 34621001  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 34748356 - 34748438
Alignment:
Q  149 tgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacatagatcactttacc 231  Q
    |||||||| |||||||||  |||||  |||||||  |||||||||||||||||| | |  |||| |||||| |||||||||||    
T  34748356 tgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttacc 34748438  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 34898731 - 34898777
Alignment:
Q  151 attctataattgatttcaacactccaatttatggttcaactcacttt 197  Q
    |||||| ||||||||| ||||||| ||||||| ||||||||||||||    
T  34898731 attctagaattgattttaacactcgaatttattgttcaactcacttt 34898777  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 6021835 - 6021890
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    |||||||||||||| |||||  |||||| | |||||||||||||||||||||||||    
T  6021835 tttgattctataatagatttttacactcaagtttatggttcaactcacttttacat 6021890  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 24587949 - 24587998
Alignment:
Q  153 tctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    |||||||||||||| ||||||| |||||||  ||||||||||||||||||    
T  24587949 tctataattgattttaacactcaaatttattattcaactcacttttacat 24587998  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 10324992 - 10324937
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    ||||||||||||||||||||  |||||| ||||||| |||  ||||||||||||||    
T  10324992 tttgattctataattgatttttacactcaaatttattgttatactcacttttacat 10324937  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 7790693 - 7790644
Alignment:
Q  150 gattctataattgatttcaacactccaatttatggttcaactcactttta 199  Q
    |||||||||||||||||  |||| | ||||||| ||||||||||||||||    
T  7790693 gattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 42858143 - 42858194
Alignment:
Q  151 attctataattgatttcaacactccaatttatggttcaactcacttttacat 202  Q
    ||||||||||||||||  |||| | ||||||| |||||||||||||||||||    
T  42858143 attctataattgattttcacacacaaatttatagttcaactcacttttacat 42858194  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 14166 - 14084
Alignment:
Q  149 tgattctataattgatttcaacactccaatttatggttcaactcacttttacatcattacatccgaacatagatcactttacc 231  Q
    |||||||| |||||||||  |||||| |||||||  ||||||||||||| |||| | |  |||| |||||| |||||||||||    
T  14166 tgattctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttacc 14084  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 41788347 - 41788399
Alignment:
Q  147 tttgattctataattgatttcaacactccaatttatggttcaactcactttta 199  Q
    ||||| |||||||||||||| ||||||| |||||   ||||||||||||||||    
T  41788347 tttgagtctataattgattttaacactcaaatttgctgttcaactcactttta 41788399  T

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