View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_27 (Length: 290)
Name: NF1809_low_27
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 31212810 - 31213069
Alignment:
| Q |
13 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31212810 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
31212909 |
T |
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| Q |
113 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31212910 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
31213009 |
T |
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| Q |
213 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctg |
272 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31213010 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctg |
31213069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 31218565 - 31218824
Alignment:
| Q |
13 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218565 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
31218664 |
T |
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| Q |
113 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
212 |
Q |
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| T |
31218665 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
31218764 |
T |
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| Q |
213 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctg |
272 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31218765 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctg |
31218824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 47896661 - 47896405
Alignment:
| Q |
13 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47896661 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattgtctcaccaca |
47896562 |
T |
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| Q |
113 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
212 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896561 |
acacgc---tgagactaaacttacgtctgatgccatctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
47896465 |
T |
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| Q |
213 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctg |
272 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47896464 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctg |
47896405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 4958167 - 4958253
Alignment:
| Q |
178 |
ccgcctgagattgtatcgcttctcccctgtaaatggggt---gggtggagcaactgttgaacttttctttttgcgcgcaccagctgt |
261 |
Q |
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||||||||| ||||| |||||||||||||||| | | || |||||||||||||||||| |||||||| |||||| |||||||||| |
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| T |
4958167 |
ccgcctgaggttgtaacgcttctcccctgtaacttgtgttgtgggtggagcaactgttgaccttttcttcttgcgcccaccagctgt |
4958253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 4957794 - 4957824
Alignment:
| Q |
31 |
actaactaatatttcaatttgaagcaacctt |
61 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4957794 |
actaactaatatttcaatttgaagcaacctt |
4957824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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