View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809_low_28 (Length: 285)

Name: NF1809_low_28
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809_low_28
NF1809_low_28
[»] chr4 (16 HSPs)
chr4 (1-272)||(36107875-36108146)
chr4 (12-268)||(36100627-36100883)
chr4 (13-268)||(34971503-34971758)
chr4 (12-272)||(21482618-21482878)
chr4 (14-233)||(36080024-36080243)
chr4 (12-264)||(36090197-36090449)
chr4 (21-241)||(38090639-38090859)
chr4 (24-230)||(38125476-38125682)
chr4 (72-229)||(38129477-38129634)
chr4 (84-213)||(38145659-38145788)
chr4 (38-241)||(38061829-38062032)
chr4 (136-241)||(38072848-38072953)
chr4 (110-241)||(38058494-38058625)
chr4 (136-241)||(38086358-38086463)
chr4 (131-202)||(38149514-38149585)
chr4 (156-241)||(38081953-38082038)
[»] chr6 (1 HSPs)
chr6 (1-272)||(6838636-6838907)
[»] chr2 (9 HSPs)
chr2 (12-268)||(8338511-8338767)
chr2 (65-235)||(11933730-11933900)
chr2 (65-235)||(11946951-11947121)
chr2 (45-232)||(11821182-11821369)
chr2 (88-232)||(11834995-11835139)
chr2 (156-235)||(11917650-11917729)
chr2 (160-223)||(35538966-35539029)
chr2 (85-234)||(11787011-11787160)
chr2 (90-208)||(11803587-11803705)
[»] chr3 (3 HSPs)
chr3 (153-223)||(2152492-2152562)
chr3 (153-241)||(2196691-2196779)
chr3 (153-223)||(2176151-2176221)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 36107875 - 36108146
Alignment:
Q  1 aaagcaacaagcttgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttgg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36107875 aaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttgg 36107974  T
Q  101 tctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataaga 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36107975 tctttctgttgataatattattgatgcaaaaatggttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataaga 36108074  T
Q  201 ggtggtggtggtgctagttttggtgttattctttcatggaaacttcaattggttccagtaactccacaggtt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36108075 ggtggtggtggtgctagttttggtgttattctttcatggaaacttcaattggttccggtaactccacaggtt 36108146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 36100627 - 36100883
Alignment:
Q  12 cttgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttg 111  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36100627 cttgctttcccatctggggtctgtttttctctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctattg 36100726  T
Q  112 ataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtgg 211  Q
    ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  36100727 ataatatcattgatgcaaaaattgttgatgtcaatggtaatatccttgatagaaagtcaatgggagaagatctattttgggctataaggggtggtggtgg 36100826  T
Q  212 tgctagttttggtgttattctttcatggaaacttcaattggttccagtaactccaca 268  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||    
T  36100827 tgctagttttggtgttattctttcatggaaacttaaactggttcaagtaactccaca 36100883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 34971758 - 34971503
Alignment:
Q  13 ttgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttga 112  Q
    ||||||| ||| | ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  34971758 ttgcttttccatccggggtctgttttactgtaggtgctggtggtcatttttctggtggtggttatggaaatttgatgagaaaatttggtctttctattga 34971659  T
Q  113 taatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggt 212  Q
    |||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  34971658 taatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggt 34971559  T
Q  213 gctagttttggtgttattctttcatggaaacttcaattggttccagtaactccaca 268  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||| || |||||    
T  34971558 gctagttttggtgttattctttcatggaaacttaaattggttcaagttacaccaca 34971503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 21482618 - 21482878
Alignment:
Q  12 cttgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttg 111  Q
    |||||||||||| | || || |||||| || | || |||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  21482618 cttgctttcccatccggcgtttgtttttctgtcggagctggtggtcatttttctggtggtggatatggaaatatgatgagaaaatttggtctttctgttg 21482717  T
Q  112 ataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtgg 211  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21482718 ataatattattgacgcaaaaattgttgatgtgaatggtaatatccttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtgg 21482817  T
Q  212 tgctagttttggtgttattctttcatggaaacttcaattggttccagtaactccacaggtt 272  Q
    |||||||| |||||||||| | || ||||||||  ||||||||| ||||||  ||||||||    
T  21482818 tgctagttatggtgttattttgtcttggaaactcaaattggttcaagtaacctcacaggtt 21482878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 36080024 - 36080243
Alignment:
Q  14 tgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgat 113  Q
    |||||| ||||||||||| |||  |||  ||| | ||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  36080024 tgcttttccagctggggtgtgtcctacagtagctactggtggtcatttttcaggtggtggttatggtaatttaatgagaaaatttggtctatctgttgat 36080123  T
Q  114 aatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtg 213  Q
    ||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  36080124 aatataattgacgcaaaaattgttgatgttaatggtagtattcttgatagaaaatcaatgggagaagatttattttgggctataaggggtggtggtggtg 36080223  T
Q  214 ctagttttggtgttattctt 233  Q
    | ||||||||||| ||||||    
T  36080224 caagttttggtgtcattctt 36080243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 36090449 - 36090197
Alignment:
Q  12 cttgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttg 111  Q
    |||||||||||| ||||||| |||||| |  |||| |||||||| || || ||| ||| |||| |||| || || ||||||||||||||||||||| |||    
T  36090449 cttgctttcccatctggggtatgtttttcggtaggggctggtggccaattatctagtgctgggcatggaaacttaatgagaaaatttggtctttctattg 36090350  T
Q  112 ataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtgg 211  Q
    ||||||  ||||||||||||||||| ||||| || |||||||| |||||||||| |||||| | | ||||||||||||||||||||||||||||||||||    
T  36090349 ataataccattgatgcaaaaattgtcgatgtcaatggtaatatccttgatagaagatcaatagaaaaagatcttttttgggctataagaggtggtggtgg 36090250  T
Q  212 tgctagttttggtgttattctttcatggaaacttcaattggttccagtaactc 264  Q
     ||||||||||||||||||||||||||||||||  ||||| ||| ||||||||    
T  36090249 ggctagttttggtgttattctttcatggaaactcaaattgattcaagtaactc 36090197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 38090639 - 38090859
Alignment:
Q  21 ccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatatta 120  Q
    ||||||||||| |||  |||| | |||| |||||| |||||   |||||| |||||||||||  ||||||||||||||||  | |||||||||||||||     
T  38090639 ccagctggggtttgtcctactgttggtgttggtggacattttagtggtggggggtatggtaacatgatgagaaaatttgggttatctgttgataatattt 38090738  T
Q  121 ttgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttt 220  Q
    | ||||| || |||||||||||| | || |   | ||||||||  |||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||    
T  38090739 tggatgctaagattgttgatgttgatggaagagtgcttgatagggaatcaatgggggaagatgttttttgggctattagaggtggtggtggagctagttt 38090838  T
Q  221 tggtgttattctttcatggaa 241  Q
    |||||||||| |||| |||||    
T  38090839 tggtgttattgtttcttggaa 38090859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 38125476 - 38125682
Alignment:
Q  24 gctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattg 123  Q
    |||||||| ||| ||||| | |||| ||||||||| ||   |||||| |||||||||||  ||||||||||||||||  | ||| |||||||| || |||    
T  38125476 gctggggtttgtattactgttggtgttggtggtcacttgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgataatgttgttg 38125575  T
Q  124 atgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttgg 223  Q
    ||||  |||||||||||||||| ||||  ||||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| || || ||||||||    
T  38125576 atgctgaaattgttgatgttaatggtaggattcttgataggaaatcaatgggtgaagaacttttttgggctattagaggaggtggaggagcaagttttgg 38125675  T
Q  224 tgttatt 230  Q
     ||||||    
T  38125676 agttatt 38125682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 38129477 - 38129634
Alignment:
Q  72 gggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaa 171  Q
    |||||||||||  ||||||||||||| ||  | ||| ||||||||||| ||||||| |||||| ||||||| || ||||  |||||||| |  ||| | |    
T  38129477 gggtatggtaacatgatgagaaaattcgggttatctattgataatattgttgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaacta 38129576  T
Q  172 tgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttat 229  Q
    |||| |||||||||||||||||||| ||||| ||||| || || |||||||| |||||    
T  38129577 tgggggaagatcttttttgggctattagaggaggtggaggagcaagttttggagttat 38129634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 38145659 - 38145788
Alignment:
Q  84 ttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatc 183  Q
    ||||||||||||| |||||||  |||||||||| |  | |||||   ||| |||||||  |||||||| |||||||| |||||| | |||||||| ||||    
T  38145659 ttgatgagaaaatatggtcttggtgttgataatgtcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatc 38145758  T
Q  184 ttttttgggctataagaggtggtggtggtg 213  Q
    | ||||||||||||||||||||||| ||||    
T  38145759 tattttgggctataagaggtggtggaggtg 38145788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 38062032 - 38061829
Alignment:
Q  38 tactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaattgtt 137  Q
    |||| |||||| |||||| || |||  ||||||||| ||||| || ||| || | ||||| |||||| | | ||||||||||||||||||  | ||  ||    
T  38062032 tactgtaggtgttggtggacacttcagtggtggtggctatggaaacttggtgcgtaaattcggtcttgcagctgataatattattgatgctcacataatt 38061933  T
Q  138 gatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttcat 237  Q
    ||||| |||||||   ||||||| ||| || ||||||| || ||| ||||||||||||| ||||| ||||| || || |||||||| || ||  ||||||    
T  38061932 gatgtgaagggtaggtttcttgacagagaagcaatgggtgaggattttttttgggctattagaggaggtggaggagcaagttttggagtcataatttcat 38061833  T
Q  238 ggaa 241  Q
    ||||    
T  38061832 ggaa 38061829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 38072848 - 38072953
Alignment:
Q  136 ttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttc 235  Q
    ||||||| |||||||   ||||||| ||| || ||||||| |||||| | ||||||||||| ||||||||||| || || ||||||||||| ||  ||||    
T  38072848 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttc 38072947  T
Q  236 atggaa 241  Q
    ||||||    
T  38072948 atggaa 38072953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 241
Target Start/End: Original strand, 38058494 - 38058625
Alignment:
Q  110 tgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggt 209  Q
    ||||||||| ||||||||  | ||  ||||||| |||||||   ||||||| ||| || ||||||| |||||| | ||||||||||| |||||||||||     
T  38058494 tgataatataattgatgctcacataattgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtgga 38058593  T
Q  210 ggtgctagttttggtgttattctttcatggaa 241  Q
    || || |||||||| || ||  ||||||||||    
T  38058594 ggagcaagttttggagtcataatttcatggaa 38058625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 38086358 - 38086463
Alignment:
Q  136 ttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttc 235  Q
    ||||||| |||||||   ||||||| ||| || ||||||| || ||| | ||||||||||| ||||||||||| || || ||||||||||| ||  ||||    
T  38086358 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttc 38086457  T
Q  236 atggaa 241  Q
    ||||||    
T  38086458 atggaa 38086463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 38149514 - 38149585
Alignment:
Q  131 aattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagagg 202  Q
    ||||||||||| ||| || || |||||||| || ||| ||||||||||||| || |||||||| ||||||||    
T  38149514 aattgttgatgctaatggaaaaattcttgacaggaaagcaatgggagaagacctattttgggcaataagagg 38149585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 38081953 - 38082038
Alignment:
Q  156 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttcatggaa 241  Q
    ||||| ||| || ||||||| ||||||  |||||||||||| ||||||||||| || || |||||||| || ||  ||||||||||    
T  38081953 cttgacagagaagcaatgggtgaagattatttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaa 38082038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 6838636 - 6838907
Alignment:
Q  1 aaagcaacaagcttgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttgg 100  Q
    ||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6838636 aaagcaacaagcttgctttcccatctggggtgtgctttactgtaggtgctggtggtcatttctctggtggtgggtatggaaatttgatgagaaaatttgg 6838735  T
Q  101 tctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataaga 200  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6838736 tctttctattgataatattattgacgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggccataaga 6838835  T
Q  201 ggtggtggtggtgctagttttggtgttattctttcatggaaacttcaattggttccagtaactccacaggtt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  6838836 ggtggtggtggtgctagttttggtgttattctttcatggaaacttcaactggttccggtaactccacaggtt 6838907  T

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Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 8338511 - 8338767
Alignment:
Q  12 cttgctttcccagctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttg 111  Q
    |||||||||||  |||||||||||| ||| |||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||    
T  8338511 cttgctttcccgtctggggtctgttctacactaggtgctggtggtcatttttcgggtggtgggtatggaaatttgatgagaaagtttggtctttctgttg 8338610  T
Q  112 ataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtgg 211  Q
    ||||||| ||||| ||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  8338611 ataatatcattgacgcaaaaattattgatgtcaatggtaatactcttgatagaaaatcaatgggagaagatctgttttgggctattaggggtggtggtgg 8338710  T
Q  212 tgctagttttggtgttattctttcatggaaacttcaattggttccagtaactccaca 268  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  8338711 tgctagttttggtgttattctttcatggaaacttaaattggttcaaataactccaca 8338767  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 11933730 - 11933900
Alignment:
Q  65 tggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgataga 164  Q
    ||||||||| ||||||||  |||||||||||| ||||||||| |||||||||||||| |||||| ||||  | |||||||| ||||   | |||||||||    
T  11933730 tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgataga 11933829  T
Q  165 aaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttc 235  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||| |||||||    
T  11933830 aaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 11933900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 11946951 - 11947121
Alignment:
Q  65 tggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgataga 164  Q
    ||||||||| ||||||||  |||||||||||| ||||||||| |||||||||||||| |||||| ||||  | |||||||| ||||   | |||||||||    
T  11946951 tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgataga 11947050  T
Q  165 aaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttc 235  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||| |||||||    
T  11947051 aaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc 11947121  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 11821182 - 11821369
Alignment:
Q  45 ggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgtta 144  Q
    |||| |||||||||||||  |||||| ||||||||||   || || |||||| |||| | |||||||||||||||||||||||  |||||||||||||||    
T  11821182 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 11821281  T
Q  145 agggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattct 232  Q
    ||||||   || |  |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||| ||||    
T  11821282 agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct 11821369  T

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Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 11835139 - 11834995
Alignment:
Q  88 tgagaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatctttt 187  Q
    ||||||||| |||| | |||||||||||||||||||||||  ||||||||||||||||||| |   || |  |||| ||||||||||| |||||||||||    
T  11835139 tgagaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggaaggcttttgaataggaaatcaatgggtgaagatctttt 11835040  T
Q  188 ttgggctataagaggtggtggtggtgctagttttggtgttattct 232  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||    
T  11835039 ttgggctatacgaggcggtggtggtgctagttttggtgttgttct 11834995  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 11917650 - 11917729
Alignment:
Q  156 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  11917650 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc 11917729  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 35538966 - 35539029
Alignment:
Q  160 atagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttgg 223  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||| ||| ||||| ||||||    
T  35538966 atagaaaatcaatgggagaagatattttttgggccataagaggaggtagtgctgctacttttgg 35539029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 11787160 - 11787011
Alignment:
Q  85 tgatgagaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatct 184  Q
    |||||||||| | |||||||   | ||||||| || | || |||||||| || ||||  || || |||||||| ||||||||||| ||||| || ||  |    
T  11787160 tgatgagaaagtatggtcttggagctgataatgttctcgacgcaaaaatagtcgatgcgaacggaaatattctcgatagaaaatctatgggggaggaatt 11787061  T
Q  185 tttttgggctataagaggtggtggtggtgctagttttggtgttattcttt 234  Q
     ||||||||||| ||||||||||| ||||  ||||||||| || ||||||    
T  11787060 cttttgggctattagaggtggtggaggtggaagttttggtattcttcttt 11787011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 11803705 - 11803587
Alignment:
Q  90 agaaaatttggtctttctgttgataatattattgatgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatctttttt 189  Q
    ||||||| ||||||| | | ||||||| | ||||||||  |||| || |||||||| || || || ||  |||||||||  ||||| || ||||| ||||    
T  11803705 agaaaatatggtcttgcagctgataatgtaattgatgctcaaatggtagatgttaatggaaagatcctaaatagaaaattgatgggtgaggatctatttt 11803606  T
Q  190 gggctataagaggtggtgg 208  Q
    ||||||||||||| |||||    
T  11803605 gggctataagaggaggtgg 11803587  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 2152492 - 2152562
Alignment:
Q  153 attcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttgg 223  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| | ||||||||||    
T  2152492 attcttgatagaaaatcaatgggagaagatgttttttgggctattagaggaggtagtgctactagttttgg 2152562  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 2196691 - 2196779
Alignment:
Q  153 attcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttcatggaa 241  Q
    |||||| ||||||||||||||||||||||| |||||||||| || ||||| ||| ||| | |||||||||| || |||||| |||||||    
T  2196691 attcttaatagaaaatcaatgggagaagatgttttttgggccattagaggaggtagtgcttctagttttggagtcattcttgcatggaa 2196779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 2176151 - 2176221
Alignment:
Q  153 attcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttgg 223  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||  ||| | ||||||||||    
T  2176151 attcttgatagaaaatcaatgggagaagatgttttttgggctattagaggaggcagtgctactagttttgg 2176221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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