View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_29 (Length: 284)
Name: NF1809_low_29
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 40072922 - 40073166
Alignment:
| Q |
9 |
agcagagaggaaagcagagcatgcagagttaggtcccataggagatatacttacatcctcaatgggtcacaagatggcgtcatcagttcttgttattcaa |
108 |
Q |
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| T |
40072922 |
agcagagagggaagcagagcatgcagagttaggtcccataggagatatacttacatcctcaatgggtcacaagatggcgtcatcagtttttgttattcaa |
40073021 |
T |
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| Q |
109 |
caacatgatgtagcattgacagaggatgcaccaatgtacaaggttaaggtgcatgatgagaatgttgctgaggtttcatctggaaggcatgagatctctg |
208 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40073022 |
caacatgatgtagcattgacagaggatgtaccaatgtacaaggttaaggtgcatgatgagaatgttgctgaggtttcatctggaaggcatgagatctctg |
40073121 |
T |
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| Q |
209 |
tagcaaatgatgtgtaattacttggtatttttatgcattatgttg |
253 |
Q |
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| T |
40073122 |
tagcaaatgctgtgtaattacttggtatttttatgcattatgttg |
40073166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 40032257 - 40032495
Alignment:
| Q |
9 |
agcagagaggaaagcagagcatgcagagttaggtcccataggagatatacttacatcctcaatgggtcacaagatggcgtcatcagttcttgttattcaa |
108 |
Q |
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||||||||||| ||| || |||||||||||||||||||||||||| || | |||||||||| || | ||| |||| ||||||| | |||||||||||| |
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| T |
40032257 |
agcagagaggagagctgaacatgcagagttaggtcccataggagacattttaacatcctcaacaggacgcaaaatggtgtcatcaatacttgttattcaa |
40032356 |
T |
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| Q |
109 |
caacatgatgtagcattgacagaggatgcaccaatgtacaaggttaaggtgcatgatgagaatgttgctgaggtttcatctggaaggcatgagatctctg |
208 |
Q |
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| T |
40032357 |
caacatgatgtgacattaacagaagatgcaccaatgtacacggtcaaggtgcatgatgagaatgttgtagaggtttcatctggaagacatgaaatcacta |
40032456 |
T |
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| Q |
209 |
tagcaaatgatgtgtaattacttggtatttttatgcatt |
247 |
Q |
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||| ||||| ||||||||||| |||||||| ||||| |
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| T |
40032457 |
tagtaaatgcaatgtaattacttattatttttaagcatt |
40032495 |
T |
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