View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809_low_3 (Length: 737)
Name: NF1809_low_3
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 34140002 - 34140326
Alignment:
| Q |
18 |
caaggcaccagcatccttgtgtcttccaaggccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34140002 |
caaggcaccagcatccttgtgtcttccaaggccaagagctaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatacttg |
34140101 |
T |
|
| Q |
118 |
tagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140102 |
aagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaa |
34140201 |
T |
|
| Q |
218 |
ttataactctactcatgttgacatcaattttaaaaacaacccattagtttaaaagttaatctacctttgaatactcattgaattgaattgcaatcctaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140202 |
ttataactctactcatgttgacatcaattttaaaaacaacccattagtttaaaagttaatctacctttgaatactcattgaattgaattgcaatcctaaa |
34140301 |
T |
|
| Q |
318 |
ttatattttgacacataaattggac |
342 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
34140302 |
ttatattttgacacagaaattggac |
34140326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 34131154 - 34131398
Alignment:
| Q |
19 |
aaggcaccagcatccttgtgtcttccaaggccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttgt |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
34131154 |
aaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaataaagctagtttgatacttga |
34131253 |
T |
|
| Q |
119 |
agaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| || ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
34131254 |
agaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctatatgccagcttttccacctcttgaatatactcttcaag |
34131353 |
T |
|
| Q |
219 |
tataactctactcatgttgacatcaattttaaaaacaacccatta |
263 |
Q |
| |
|
|||| | || ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
34131354 |
tatagccctgctcatgtagacatcaattttaaacacaacccatta |
34131398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 34136845 - 34137079
Alignment:
| Q |
19 |
aaggcaccagcatccttgtgtcttccaaggccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttgt |
118 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||| |
|
|
| T |
34136845 |
aaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggcatggaggatagtggttgaatctaataaagctagtgtgatctttga |
34136944 |
T |
|
| Q |
119 |
agaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaat |
218 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |||||||| ||||| | ||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
34136945 |
agaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaacttgtaagccaacttttccatctcttcattatactcttcaac |
34137044 |
T |
|
| Q |
219 |
tataactctactcatgttgacatcaattttaaaaa |
253 |
Q |
| |
|
|||| | || || ||||| |||| ||||||||||| |
|
|
| T |
34137045 |
tatagccctgcttatgttcacataaattttaaaaa |
34137079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 34126012 - 34126244
Alignment:
| Q |
19 |
aaggcaccagcatccttgtgtcttccaaggccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| || | ||| |||| ||||||||||||| |||| ||| | | ||||||| ||||||| |
|
|
| T |
34126012 |
aaggcaccagcatccttgtgtcttcccatgccaagagctagctcaggagaaggacatggaggatagtgattgattctaaacacgctagttgtatccttga |
34126111 |
T |
|
| Q |
119 |
agaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaat |
218 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |||||||| | ||||| |||||| ||||| ||||||||||| | |||||||||||||| |
|
|
| T |
34126112 |
agaattcttcaaacctcattgcttcaagccctaagctcaaagctattaactccagcaacttagaggccaaattttccatctccttaatatactcttcaat |
34126211 |
T |
|
| Q |
219 |
tataactctactcatgttgacatcaattttaaa |
251 |
Q |
| |
|
|||| || ||||||||||||| ||||||||| |
|
|
| T |
34126212 |
tatattcctgctcatgttgacattaattttaaa |
34126244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 626 - 702
Target Start/End: Original strand, 34140342 - 34140418
Alignment:
| Q |
626 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140342 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
34140418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 34142679 - 34142860
Alignment:
| Q |
49 |
ccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatcct---tgtagaattcttcaaacctctttgcttcaa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| | ||| | ||||||||||||||| | || ||||||||||||||||||||||||||| |
|
|
| T |
34142679 |
ccaagagcaaggtgagggtaagggcatggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaa |
34142778 |
T |
|
| Q |
146 |
gtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactct |
227 |
Q |
| |
|
||||||||| | |||||| ||||| | ||| || ||| |||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
34142779 |
ctcctaagctaagagctatgagctctagcaacgtaaaggctagcttttccatctctttaatatactctttaagaataactct |
34142860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 484
Target Start/End: Complemental strand, 40333383 - 40333269
Alignment:
| Q |
369 |
aaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacacaaat |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40333383 |
aaaatgctaaaatacacgacaaaatttgtcgtcatatttacacaacaagt-ttgtaattaccacttcctatttttttcctaattttgatttgacacaaat |
40333285 |
T |
|
| Q |
469 |
gacaaattttgcctcc |
484 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40333284 |
gacaaattttgcctcc |
40333269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 566 - 620
Target Start/End: Complemental strand, 40333079 - 40333025
Alignment:
| Q |
566 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcttgctgtatagcag |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40333079 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcgtgctgtatagcag |
40333025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 40333203 - 40333163
Alignment:
| Q |
483 |
ccaccattcctttggtagcattgttttttaatatatactat |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40333203 |
ccaccattcctttggtagcattgttttttaatatatactat |
40333163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 702 - 737
Target Start/End: Original strand, 34140950 - 34140985
Alignment:
| Q |
702 |
aaccagttggaatgatctcatctctagcaaccttct |
737 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34140950 |
aaccagttggaatgatctcatctctagcaaccttct |
34140985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 40333114 - 40333076
Alignment:
| Q |
492 |
ctttggtagcattgttttttaatatatactataaacaaa |
530 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
40333114 |
ctttgataacattgttttttaatatatactataaacaaa |
40333076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 541
Target Start/End: Complemental strand, 6020164 - 6020123
Alignment:
| Q |
501 |
cattgttttttaatata-tactataaacaaaagcatcaataa |
541 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
6020164 |
cattgttttttaatatactactatatacaaaagcatcaataa |
6020123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 541
Target Start/End: Original strand, 48583854 - 48583895
Alignment:
| Q |
501 |
cattgttttttaatata-tactataaacaaaagcatcaataa |
541 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
48583854 |
cattgttttttaatatactactatatacaaaagcatcaataa |
48583895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 492 - 626
Target Start/End: Original strand, 13066753 - 13066886
Alignment:
| Q |
492 |
ctttggtagcattgttttttaatatatactataaacaaaagcatcaataaactgaaagaaaactaataatacagcaaattgtatgttcgtgtggctctcg |
591 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13066753 |
ctttgataacattgttttttaatatatactataaacaaaagcatcaataaactgaaagaaa-ctaataatacaacaaattgtatgttcgtgtggctctcg |
13066851 |
T |
|
| Q |
592 |
tgtgctgactttgtcttgctgtatagcagcgctct |
626 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13066852 |
tgtgctgactttgtcatgctgtatagcagtgctct |
13066886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 366 - 486
Target Start/End: Original strand, 13066481 - 13066600
Alignment:
| Q |
366 |
aggaaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacaca |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13066481 |
aggaaaatgctaaaatacacgacaaaatttgtcgacagatttacacgacaagt-ttgtaattaccacttcctatttttttcctaattttgatttgacaca |
13066579 |
T |
|
| Q |
466 |
aatgacaaattttgcctccac |
486 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
13066580 |
aatgacaaatttttcctccac |
13066600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 523
Target Start/End: Original strand, 13066664 - 13066704
Alignment:
| Q |
483 |
ccaccattcctttggtagcattgttttttaatatatactat |
523 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13066664 |
ccaccatttctttggtagcattgttttttaatatatactat |
13066704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 367 - 486
Target Start/End: Original strand, 17074356 - 17074474
Alignment:
| Q |
367 |
ggaaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacacaa |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||||||||| | |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
17074356 |
ggaaaatgttaaaatacacgacaaaaattgtcgtcaaatttacacgacaagt-ttgttattaccacttactatttttttcctaattttgatttgacacaa |
17074454 |
T |
|
| Q |
467 |
atgacaaattttgcctccac |
486 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
17074455 |
atgacaaattatgcctccac |
17074474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 367 - 486
Target Start/End: Complemental strand, 17573914 - 17573796
Alignment:
| Q |
367 |
ggaaaatgctaaaatacacgacaaaatttgtcgtcagatttacacgacaagtgctaaaattaccacttcctannnnnnncctaattttgatttgacacaa |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||||||||| | |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
17573914 |
ggaaaatgttaaaatacacgacaaaaattgtcgtcaaatttacacgacaagt-ttgttattaccacttactatttttttcctaattttgatttgacacaa |
17573816 |
T |
|
| Q |
467 |
atgacaaattttgcctccac |
486 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
17573815 |
atgacaaattatgcctccac |
17573796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 501 - 562
Target Start/End: Complemental strand, 41313034 - 41312972
Alignment:
| Q |
501 |
cattgttttttaatata-tactataaacaaaagcatcaataaactgaaagaaaactaataata |
562 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| | ||||||| ||| ||||| |
|
|
| T |
41313034 |
cattgttttttaatatactactatatacaaaagcatcaataaccataaagaaatctattaata |
41312972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 544
Target Start/End: Original strand, 13557696 - 13557730
Alignment:
| Q |
510 |
ttaatatatactataaacaaaagcatcaataaact |
544 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13557696 |
ttaatatatactatatacaaaagcatcaataaact |
13557730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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