View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809_low_31 (Length: 278)
Name: NF1809_low_31
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 11859084 - 11858822
Alignment:
| Q |
1 |
atctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaaatctgtgtatgccaactttcttttctcattagtatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11859084 |
atctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaaatctttgtatgccaactttcttttctcattagtatta |
11858985 |
T |
|
| Q |
101 |
ctaataactgttttttcttccttcagcagcagttcgagttcctcggtggctttgttgacttgaacaatggctttcttgaattggtaacgatttattatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11858984 |
ctaataactgttttttcttccttcagcagcagttcgagttcctcagtggctttgttgacttggacaatggctttcttgaattggtaacgatttataatgt |
11858885 |
T |
|
| Q |
201 |
ttaagcccgttttgataagcgattttgatgagtcggtgatactctccttgtaacgaagatcct |
263 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11858884 |
ttaagcctgttttgataagcgattttgatgagtcggtgatactctccttgtaacgaagatcct |
11858822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12037882 - 12037773
Alignment:
| Q |
1 |
atctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaaatctgtgtatgccaactttcttttctcattagtatta |
100 |
Q |
| |
|
|||||||| ||| | |||||| ||||||| |||||||||||||||| ||| |||||||||| ||| |||| |||||||||||||| |||||||| |
|
|
| T |
12037882 |
atctataagctcttccttctcattttctcttccaacagctacatgcttggtatttttctcaaagtcttcacatgcagactttcttttctcagtagtatta |
12037783 |
T |
|
| Q |
101 |
ctaataactg |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
12037782 |
ctaataactg |
12037773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University