View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_32 (Length: 269)
Name: NF1809_low_32
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 42786697 - 42786930
Alignment:
| Q |
1 |
attaatagagcatcattttattagctatagccaaatcttggataattattatctataatagtaaagatatagttaaataatacatacttacaaaagaacc |
100 |
Q |
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| T |
42786697 |
attaatagagcatcattttattagctatagccaaatcttggataattattat------------------agttaaataatacatacttacaaaagaacc |
42786778 |
T |
|
| Q |
101 |
tgagggatatttgatgaatttatatgagttgattgagacgacatatatacatagtaatggagacaacagagaaagaaggagctccccttcagtccaagca |
200 |
Q |
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| T |
42786779 |
tgagggatatttgatgaatttatatgagttgattgagacgacatatatacatagtaatggagacaacagagaaagaaggagctccccttcagtccaagca |
42786878 |
T |
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| Q |
201 |
catatacatagggatcaatgcaaaacatatatctgccacttcattcatatat |
252 |
Q |
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| T |
42786879 |
catatacatagggatcaatgcaaaacatatatcttccacttcattcatatat |
42786930 |
T |
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