View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_33 (Length: 261)
Name: NF1809_low_33
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 1450163 - 1449931
Alignment:
| Q |
11 |
cacagaaaagctaaggcaattggcttaaaactacaacggagcagtttgtacataaaactatttcttggattgtctttatatcttgaatttatcaaaacat |
110 |
Q |
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| T |
1450163 |
cacagaaaagctaaggcaattggcttaaaactacaatggagcagtttgtacataaaactattgcttggattgtctttatatcttgaatttatgaaaacat |
1450064 |
T |
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| Q |
111 |
aaattattgctgaaacctaaatatacaaatgaacaaataaggaagatatatcagcaataaaagaatgataaagcttctatatatcttctaagacatttag |
210 |
Q |
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| T |
1450063 |
aaattattgctgaaacctaaatatacaaatgaacaaataaggaagatatatcagcaataaaagaatgataaagcttctatatatcttctaagacatttag |
1449964 |
T |
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| Q |
211 |
gtggagctttctagctttgctctcaggtccttc |
243 |
Q |
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| T |
1449963 |
gtggagctttctagctttgctttcaggtccttc |
1449931 |
T |
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