View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_35 (Length: 252)
Name: NF1809_low_35
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 33568877 - 33568674
Alignment:
| Q |
35 |
taccatctcttagcactaataacatttnnnnnnntattacaattttgtaacaaccatgttattggcacaagcaaatttttccgagtactaatctccttca |
134 |
Q |
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| T |
33568877 |
taccatctcttagcactaataacatttaaaaaaatattataattttgtaacaaccatgttattggcgcaagcaaatttttccgagtactaatctccttca |
33568778 |
T |
|
| Q |
135 |
atttggtcagcaacatcaatttttccaataa-aaaagtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaagtagactctaa |
233 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
33568777 |
atttggtcagcaacatcaatttttccaataaaaaaagtatgcaacagtaatttgaactgtaacataatacacatgtctctggatcaaaagcagactctaa |
33568678 |
T |
|
| Q |
234 |
tacc |
237 |
Q |
| |
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|||| |
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|
| T |
33568677 |
tacc |
33568674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 21495215 - 21495273
Alignment:
| Q |
164 |
aaaaaagtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaa |
222 |
Q |
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||||| ||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
21495215 |
aaaaaggtatgcaactgtaatttgaactgtaacataatacacatgtctttggatcaaaa |
21495273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 19025835 - 19025777
Alignment:
| Q |
164 |
aaaaaagtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaa |
222 |
Q |
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||||| ||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
19025835 |
aaaaaggtatgcaactgtaatttgaactgtaacataatacacatgtctttggatcaaaa |
19025777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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