View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809_low_39 (Length: 248)

Name: NF1809_low_39
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809_low_39
NF1809_low_39
[»] chr4 (9 HSPs)
chr4 (1-233)||(7103987-7104221)
chr4 (1-233)||(40756225-40756462)
chr4 (1-233)||(17318520-17318757)
chr4 (116-233)||(7109300-7109417)
chr4 (1-155)||(29907630-29907789)
chr4 (1-158)||(50429995-50430157)
chr4 (1-100)||(44527731-44527833)
chr4 (6-43)||(7109419-7109456)
chr4 (1-158)||(11422566-11422726)
[»] chr5 (3 HSPs)
chr5 (1-233)||(32401507-32401744)
chr5 (168-230)||(43570243-43570305)
chr5 (1-58)||(5153081-5153138)
[»] scaffold0578 (1 HSPs)
scaffold0578 (1-229)||(4162-4395)
[»] chr2 (5 HSPs)
chr2 (1-229)||(5007283-5007516)
chr2 (1-191)||(17539078-17539273)
chr2 (108-233)||(23497104-23497228)
chr2 (62-158)||(20559382-20559480)
chr2 (197-233)||(26024847-26024883)
[»] chr8 (7 HSPs)
chr8 (1-233)||(19237746-19237983)
chr8 (1-233)||(19310930-19311167)
chr8 (1-233)||(8970274-8970511)
chr8 (1-225)||(14154266-14154494)
chr8 (109-233)||(25481840-25481964)
chr8 (62-158)||(9492487-9492585)
chr8 (1-125)||(7027740-7027862)
[»] chr7 (2 HSPs)
chr7 (1-226)||(11790373-11790604)
chr7 (62-233)||(25616260-25616433)
[»] chr6 (2 HSPs)
chr6 (1-158)||(35241645-35241807)
chr6 (1-158)||(29618370-29618532)
[»] scaffold0785 (1 HSPs)
scaffold0785 (89-233)||(380-526)
[»] scaffold0129 (1 HSPs)
scaffold0129 (62-230)||(44533-44702)
[»] scaffold0524 (1 HSPs)
scaffold0524 (14-224)||(9648-9863)
[»] scaffold0902 (1 HSPs)
scaffold0902 (8-151)||(2219-2366)
[»] chr3 (4 HSPs)
chr3 (168-226)||(9490883-9490941)
chr3 (1-118)||(55455646-55455768)
chr3 (113-158)||(46513343-46513388)
chr3 (79-158)||(31497100-31497181)
[»] chr1 (4 HSPs)
chr1 (72-143)||(43543982-43544055)
chr1 (168-233)||(43542388-43542453)
chr1 (110-158)||(9438412-9438460)
chr1 (17-133)||(18746165-18746285)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7104221 - 7103987
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagacttaaatacaagacggagtttcttcgacctatatgcaatcta 100  Q
    ||||||| |||||||||||||||||||||||| |||| ||||| ||||||||  |||||||||||| |||||||||||||||||||| ||||||||| ||    
T  7104221 tttttacattaaagacaatttcaataacgaaagtctgacaataaatcaaatgtcaagacttaaatataagacggagtttcttcgacccatatgcaattta 7104122  T
Q  101 gattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgcttat 198  Q
     ||||||  ||||||||||||||||||||| ||||| |||||||| |||||||||||||| |       ||||||||||||||||||| ||||| |||||    
T  7104121 aattcttaagagcatatttagctaaataataagcagcttggttggcttcacgcctaacatgcaaaaaaattaaactacgaaaactacccttaatacttat 7104022  T
Q  199 acaatctcgaataatagagccaacatagttgggag 233  Q
    |||||||||||||||||||||||||||||||||||    
T  7104021 acaatctcgaataatagagccaacatagttgggag 7103987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 40756225 - 40756462
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||||||||||||||||| |||| ||| |||| ||||   ||| ||||||||  ||||||    ||||||||| ||||||||||| || | |||||||||    
T  40756225 tttttacgttaaagacaaattcattaatgaaagtctgatgataaatcaaatgtcaagactgcagaaatacaaggcggagtttctttgatccatatgcaat 40756324  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||| ||||||  |||||||||| |||||||||| |||||||||||||  |||||||||||||| |       ||||||||| |||| |||| ||||  ||    
T  40756325 ctaaattcttaagagcatattttgctaaataatgagcagtttggttgacttcacgcctaacatgcaaaaaatttaaactacaaaaattacccttaaaact 40756424  T
Q  196 tatacaatctcgaataatagagccaacatagttgggag 233  Q
     |||||||||||||||||||||||||||||||||||||    
T  40756425 aatacaatctcgaataatagagccaacatagttgggag 40756462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 17318520 - 17318757
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    ||||||| |||||||||| |||| ||| |||| ||| |||||  |||||| || ||||||    ||||||||| |||||||||||||| | |||||||||    
T  17318520 tttttaccttaaagacaaattcattaatgaaagtctcgcaatgaatcaaaagccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaat 17318619  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||| ||||||  ||||||| |||||||| |||| | ||| |||||||| |||||||||||||| |       ||| ||||||||||||||| || |  ||    
T  17318620 ctaaattcttaagagcataattagctaagtaatgaacagcttggttggcttcacgcctaacatgcaaaaaaattatactacgaaaactacccttcaaact 17318719  T
Q  196 tatacaatctcgaataatagagccaacatagttgggag 233  Q
     ||||||||||||||||||||| |||||||||| ||||    
T  17318720 aatacaatctcgaataatagagtcaacatagttaggag 17318757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 7109417 - 7109300
Alignment:
Q  116 ttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgcttatacaatctcgaataatag 215  Q
    ||||||||||||| ||||| |||||||  |||||||||||||| |       ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  7109417 ttagctaaataataagcagcttggttgacttcacgcctaacatgcaaaaaaattaaactacgaaaactacccttaatgcttatacagtctcgaataatag 7109318  T
Q  216 agccaacatagttgggag 233  Q
    ||||||||||||| ||||    
T  7109317 agccaacatagttaggag 7109300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 29907630 - 29907789
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagact---taaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||||||| |||| ||||||||| |||| ||| |||||||||  ||||||||  ||||||   |||||||||| |||||||||||| | | |||||||||    
T  29907630 tttttacgctaaaaacaatttcattaacaaaagtctggcaattaatcaaatgtcaagactacataaatacaaggcggagtttcttcaatccatatgcaat 29907729  T
Q  98 ctagattcttga--gcatatttagctaaataattagcagtttggttggtttcacgcctaa 155  Q
    ||| |||||| |  ||||||||||||||||||| |||||||| |||||||| ||||||||    
T  29907730 ctaaattcttaatagcatatttagctaaataatgagcagtttagttggttttacgcctaa 29907789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 50430157 - 50429995
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    ||||||||||||| ||||||||| |||  ||| | || ||||| ||||  |||||| |||    ||||||||| |||||| ||||||||| |||||||||    
T  50430157 tttttacgttaaaaacaatttcattaataaaagtttgacaataaatcatgtgctaaaactgtaaaaatacaaggcggagtctcttcgacccatatgcaat 50430058  T
Q  98 ctagattcttgag--catatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
     |  ||| |  ||  |||||||||||||||||| |||||||||||||  ||||||||||||||    
T  50430057 ttgaattatgtagatcatatttagctaaataatgagcagtttggttgacttcacgcctaacat 50429995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 44527833 - 44527731
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagact---taaatacaagacggagtttcttcgacctatatgcaat 97  Q
    ||||||||||||||||  ||||| |||| |||||||| ||||| |||| |||||||||||    ||||| ||   ||||||||||||| |||||||||||    
T  44527833 tttttacgttaaagaccgtttcattaacaaaaatctgacaataaatcacatgctaagactgcagaaatataatgtggagtttcttcgatctatatgcaat 44527734  T
Q  98 cta 100  Q
    |||    
T  44527733 cta 44527731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 7109456 - 7109419
Alignment:
Q  6 acgttaaagacaatttcaataacgaaaatctggcaata 43  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  7109456 acgttaaagacaaattcaataacgaaagtctggcaata 7109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 11422566 - 11422726
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagact-taaatacaagacggagtttcttcgacctatatgcaatct 99  Q
    |||||||||||||||  |||| | |||| ||| | |||||||| ||| ||||| ||||||  | |||||||  ||||| ||||||| | |||||||||||    
T  11422566 tttttacgttaaagatgattttattaacaaaagtttggcaataaatcgaatgccaagactgcagatacaaggtggagtctcttcgatccatatgcaatct 11422665  T
Q  100 agattct--tgagcatatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    | ||| |   |||||| ||||| |||||||| ||||  ||| |||| |||| |||||||||    
T  11422666 aaattatgaagagcatgtttagataaataatgagcaacttgattggcttcatgcctaacat 11422726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32401507 - 32401744
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||| |||||||| ||| ||||| |||||||| |||||||||| ||||||||| ||||||    ||||||||| |||||||||||||| | |||||||||    
T  32401507 ttttgacgttaaaaacagtttcattaacgaaagtctggcaataaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaat 32401606  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||| ||||||  ||||||||||||||||||||| ||||| |||||||| |||| ||||||||| |       ||||||||||||||||||| ||||   |    
T  32401607 ctaaattcttaagagcatatttagctaaataatgagcagcttggttggcttcatgcctaacatgcaaaaaatttaaactacgaaaactacccttaaaatt 32401706  T
Q  196 tatacaatctcgaataatagagccaacatagttgggag 233  Q
     |||||||||||||||||||||||||||||||||||||    
T  32401707 aatacaatctcgaataatagagccaacatagttgggag 32401744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 43570305 - 43570243
Alignment:
Q  168 ttaaactacgaaaactacctttaatgcttatacaatctcgaataatagagccaacatagttgg 230  Q
    ||||||||||||||||||| ||||  | ||||||||||| |||||||||| ||||||||||||    
T  43570305 ttaaactacgaaaactacccttaaaacatatacaatctcaaataatagagtcaacatagttgg 43570243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5153081 - 5153138
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaaga 58  Q
    ||||||||||||||||| |||||||||||||| |||| || || || |||||| ||||    
T  5153081 tttttacgttaaagacattttcaataacgaaagtctgacagtaaattaaatgccaaga 5153138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4395 - 4162
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||| |||||||||| ||||||| |||||||| ||| | |||| ||||||||| ||||||    ||||||||| |||||||||||||||| |||||||||    
T  4395 ttttgacgttaaagataatttcattaacgaaagtctagaaataaatcaaatgccaagactgcggaaatacaaggcggagtttcttcgacccatatgcaat 4296  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||| ||||||   |||||||||||||||||||| ||||| |||||||| |||||| |  |||| |       ||||||||||||||||||| ||||  ||    
T  4295 ctaaattcttaaaagcatatttagctaaataatgagcagcttggttggcttcacggcgcacatgcaaaaaatttaaactacgaaaactacccttaaaact 4196  T
Q  196 tatacaatctcgaataatagagccaacatagttg 229  Q
     |||||||||| ||||||||||||||||||||||    
T  4195 aatacaatctcaaataatagagccaacatagttg 4162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5007283 - 5007516
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||| |||||||||| ||||||| |||||||| ||| | |||| ||||||||| ||||||    ||||||||| |||||||||||||||| |||||||||    
T  5007283 ttttgacgttaaagataatttcattaacgaaagtctagaaataaatcaaatgccaagactgcggaaatacaaggcggagtttcttcgacccatatgcaat 5007382  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||| ||||||   |||||||||||||||||||| ||||| |||||||| |||||| |  |||| |       ||||||||||||||||||| ||||  ||    
T  5007383 ctaaattcttaaaagcatatttagctaaataatgagcagcttggttggcttcacggcgcacatgcaaaaaatttaaactacgaaaactacccttaaaact 5007482  T
Q  196 tatacaatctcgaataatagagccaacatagttg 229  Q
     |||||||||| ||||||||||||||||||||||    
T  5007483 aatacaatctcaaataatagagccaacatagttg 5007516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 17539273 - 17539078
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagact---taaatacaagacggagtttcttcgacctatatgcaat 97  Q
    ||||||||||||||| || |||| ||| |||| |||||||||| || |||||| ||||||    ||||| ||| |||||||| ||||| | |||||||||    
T  17539273 tttttacgttaaagaaaaattcattaatgaaagtctggcaataaattaaatgcaaagactgcagaaatataaggcggagttttttcgatccatatgcaat 17539174  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaa 191  Q
    ||| ||||||  |||| ||||||| |||||||| ||||| |||||||| | |||| ||||||| |       ||||||||||||||||||| ||||    
T  17539173 ctacattcttaagagcgtatttagttaaataatgagcagcttggttggctgcacgtctaacatgcaaaaaatttaaactacgaaaactaccattaa 17539078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 23497228 - 23497104
Alignment:
Q  108 gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgcttatacaatctcg 207  Q
    ||||||||||||||||||||| ||||| |||||||| || ||| ||||||| |       ||||| ||||||||||||| ||||  || ||||||||||     
T  23497228 gagcatatttagctaaataatgagcagcttggttggctt-acgtctaacatgcaaaaaaattaaattacgaaaactacccttaaaactaatacaatctca 23497130  T
Q  208 aataatagagccaacatagttgggag 233  Q
     ||||||||| |||||||||||||||    
T  23497129 tataatagagtcaacatagttgggag 23497104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 20559480 - 20559382
Alignment:
Q  62 aaatacaagacggagtttcttcgacctatatgcaatctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    ||||| ||| |||||||||||| ||| ||||| |||||| ||||||  ||||||||||||||||||||| || || |||||||| ||||| ||||||||    
T  20559480 aaatataaggcggagtttcttcaacccatatgtaatctaaattcttaagagcatatttagctaaataataagaagcttggttggcttcacacctaacat 20559382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 26024883 - 26024847
Alignment:
Q  197 atacaatctcgaataatagagccaacatagttgggag 233  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26024883 atacaatctcgaataatagagccaacatagttaggag 26024847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 19237983 - 19237746
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||||| ||||| |||||||||| |||||||| | |||||||| ||||||||| ||  ||    ||||| |||||||||||||||| |   |||||||||    
T  19237983 tttttaagttaatgacaatttcattaacgaaagtttggcaataaatcaaatgccaaagctgcacaaatataagacggagtttcttcaattcatatgcaat 19237884  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||  ||||||  ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |       ||||||||| ||||||||||||||  ||    
T  19237883 ctgaattcttaagagcatattcagctaaataatgagcagcttggttggcttcacgcctaacatgcaaacaatttaaactacaaaaactacctttaaaact 19237784  T
Q  196 tatacaatctcgaataatagagccaacatagttgggag 233  Q
     |||||||||| ||||||||||||||||||||||||||    
T  19237783 aatacaatctcaaataatagagccaacatagttgggag 19237746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 19311167 - 19310930
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||||| ||||| |||||||||| |||||||| | |||||||| ||||||||| ||  ||    ||||| |||||||||||||||| |   |||||||||    
T  19311167 tttttaagttaatgacaatttcattaacgaaagtttggcaataaatcaaatgccaaagctgcacaaatataagacggagtttcttcaattcatatgcaat 19311068  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||  ||||||  ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |       ||||||||| ||||||||||||||  ||    
T  19311067 ctgaattcttaagagcatattcagctaaataatgagcagcttggttggcttcacgcctaacatgcaaacaatttaaactacaaaaactacctttaaaact 19310968  T
Q  196 tatacaatctcgaataatagagccaacatagttgggag 233  Q
     |||||||||| ||||||||||||||||||||||||||    
T  19310967 aatacaatctcaaataatagagccaacatagttgggag 19310930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 8970511 - 8970274
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    ||||||||||||| ||||||||| |||||||| |||  ||||| |||||||   ||||||    ||||||||| |||||||| | ||| |  ||||||||    
T  8970511 tttttacgttaaatacaatttcattaacgaaagtctaacaataaatcaaatatcaagactatagaaatacaaggcggagtttatacgatccttatgcaat 8970412  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||| ||||||  |||||||||||||| |||||| ||  |||||||||| ||||||||||||||         ||||||||||||||||||| || |  ||    
T  8970411 ctaaattcttaagagcatatttagcttaataatgagatgtttggttggcttcacgcctaacatgtacaaaatttaaactacgaaaactaccctttaaact 8970312  T
Q  196 tatacaatctcgaataatagagccaacatagttgggag 233  Q
     ||||||||| ||| ||||||| |||||||||||||||    
T  8970311 aatacaatcttgaagaatagagtcaacatagttgggag 8970274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14154494 - 14154266
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    ||||||| |||| |||||||||| |||| ||| | |||| ||| || ||||| ||| |||    |||||||||| ||||||||||| | | |||||||||    
T  14154494 tttttacattaatgacaatttcattaacaaaagtgtggctataaattaaatgttaaaactgcagaaatacaagatggagtttcttcaatccatatgcaat 14154395  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgct 195  Q
    ||| ||||||  ||| |||||| |||||||||| ||||| |||||||| ||||||||| |||| |       ||||||||||||||||||| ||||  ||    
T  14154394 ctaaattcttaagaggatattttgctaaataatgagcagattggttggcttcacgcctgacatgc-aaaaatttaaactacgaaaactaccattaaaact 14154296  T
Q  196 tatacaatctcgaataatagagccaacata 225  Q
     ||||||||| ||||||| |||||||||||    
T  14154295 aatacaatcttgaataattgagccaacata 14154266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 25481840 - 25481964
Alignment:
Q  109 agcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgcttatacaatctcga 208  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||||||| |       ||||||||| |||  |||| |||| ||| ||||||||||||    
T  25481840 agcatatttagctaaataatgagcagcttggttggcttgacgcctaacatgcagaaaatttaaactacaaaagttacccttaaagctaatacaatctcga 25481939  T
Q  209 ataatagagccaacatagttgggag 233  Q
    ||||||||| |||||||||||||||    
T  25481940 ataatagagtcaacatagttgggag 25481964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 9492487 - 9492585
Alignment:
Q  62 aaatacaagacggagtttcttcgacctatatgcaatctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    ||||||||| | |||||||||| | | |||||||||||| ||||||  |||||||||||||||||||||  |||| |||||||| |||| |||||||||    
T  9492487 aaatacaaggctgagtttcttcaatccatatgcaatctaaattcttaagagcatatttagctaaataatgtgcagcttggttggcttcatgcctaacat 9492585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 7027740 - 7027862
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagacttaaatacaa-gacggagtttcttcgacctatatgcaatct 99  Q
    ||||||||||||||||||||||| ||| ||||||||||||| | |||||||||     |  |||||||| | | |||||||||||| | |||||||||||    
T  7027740 tttttacgttaaagacaatttcattaatgaaaatctggcaacaaatcaaatgc-----cagaaatacaaggcctgagtttcttcgatccatatgcaatct 7027834  T
Q  100 agattctt--gagcatatttagctaaat 125  Q
      ||||||  ||||||||||||||||||    
T  7027835 gaattcttaagagcatatttagctaaat 7027862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11790373 - 11790604
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagact---taaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||||| |||||||||||||||| || ||||| |||| ||||| ||||||||  ||||||   |||||||||| | |||||||||||| | |||||||||    
T  11790373 tttttatgttaaagacaatttcattatcgaaagtctgacaataaatcaaatgtcaagactacataaatacaaggcagagtttcttcgatccatatgcaat 11790472  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacattc-nnnnnnnttaaactacgaaaactacctttaatgc 194  Q
    ||||||||||  || |||||||||||||||||| |||||  ||||||| |||| ||||||||| |        ||||||||| ||||||||| ||||  |    
T  11790473 ctagattcttaagatcatatttagctaaataatgagcagcgtggttggcttcatgcctaacatgcaaaaaaaattaaactacaaaaactacccttaaaac 11790572  T
Q  195 ttatacaatctcgaataatagagccaacatag 226  Q
    | ||||||||| ||||||||||||||||||||    
T  11790573 taatacaatcttgaataatagagccaacatag 11790604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 25616260 - 25616433
Alignment:
Q  62 aaatacaagacggagtttcttcgacctatatgcaatctagattcttga--gcatatttagctaaataattagcagtttggttggtttcacgcctaacatt 159  Q
    ||||| ||| |||||||||||| | |  ||||||||||| |||||| |  |||||||| |||||||||| ||||| |||||||| ||||||||||||||     
T  25616260 aaatataaggcggagtttcttcaatccgtatgcaatctaaattcttaaaagcatattttgctaaataatgagcagattggttggattcacgcctaacatg 25616359  T
Q  160 cnnnnnnnttaaactacgaaaactacctttaatgcttatacaatctcgaataatagagccaacatagttgggag 233  Q
    |       ||||||||||||||||||| ||||   | ||||||||||||||||| |||||||||||||||||||    
T  25616360 cgaaaaatttaaactacgaaaactacccttaaaattaatacaatctcgaataattgagccaacatagttgggag 25616433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 35241645 - 35241807
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||||| ||| |||||||||||| |||||||| |||||||||| ||||||||  ||||||    ||||||||| ||||||||||||||||||||||||||    
T  35241645 tttttatgttgaagacaatttcattaacgaaagtctggcaataaatcaaatgtcaagactgtagaaatacaaggcggagtttcttcgacctatatgcaat 35241744  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    ||| ||||||  || |||||||||||||||||| |||||| ||||||| || |||||||||||    
T  35241745 ctaaattcttaagaacatatttagctaaataatgagcagtctggttggctttacgcctaacat 35241807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 29618370 - 29618532
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||||||||||||||||| |||| |||  ||| |||| ||||| |||||| |  ||||||    |||||||||  ||||||||||||| | |||||||||    
T  29618370 tttttacgttaaagacaaattcattaataaaagtctgacaataaatcaaaagtcaagactgcagaaatacaaggtggagtttcttcgatccatatgcaat 29618469  T
Q  98 ctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    ||| ||||||  ||||||||||| ||||||||| | |||||||||||| ||||||||||||||    
T  29618470 ctaaattcttaagagcatatttaactaaataatgaacagtttggttggcttcacgcctaacat 29618532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 526 - 380
Alignment:
Q  89 atatgcaatctagattcttga--gcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacc 186  Q
    |||||||||||| |||||| |  ||||||||||||||||||| |||||||||||||| |||||| ||||||| |       ||||| ||||||| |||||    
T  526 atatgcaatctaaattcttaatagcatatttagctaaataatgagcagtttggttggcttcacgtctaacatgcagaaaatttaaattacgaaagctacc 427  T
Q  187 tttaatgcttatacaatctcgaataatagagccaacatagttgggag 233  Q
     |||| ||| |||||||||| |||||||||| |||||||||||||||    
T  426 cttaaagctaatacaatctctaataatagagtcaacatagttgggag 380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 230
Target Start/End: Original strand, 44533 - 44702
Alignment:
Q  62 aaatacaagacggagtttcttcgacctatatgcaatctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacatt 159  Q
    |||||||||||| ||||||||||| | |||||||||||| ||||||  ||||||||||||||||||||| |  | || |||||| ||||||||||||||     
T  44533 aaatacaagacgaagtttcttcgatccatatgcaatctaaattcttaagagcatatttagctaaataatgaataattgggttggcttcacgcctaacatg 44632  T
Q  160 cnnnnnnnttaaactacgaaaactacctttaatgcttatacaatctcgaataatagagccaacatagttgg 230  Q
    |       ||||||||||||||||||  ||||  || |||||||||||||||||| | |||||||||||||    
T  44633 ccaaaaaattaaactacgaaaactacaattaaaactaatacaatctcgaataatata-ccaacatagttgg 44702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 9648 - 9863
Alignment:
Q  14 gacaatttcaataacgaaaatctggcaatatatcaaatgctaagact---taaatacaagacggagtttcttcgacctatatgcaatctagattctt--g 108  Q
    |||||||||| |||||||| |||| | ||| ||||||||| ||||||   |||||||||| |  ||||||||| | ||| |||||||||| ||||||  |    
T  9648 gacaatttcattaacgaaactctgacgataaatcaaatgccaagactgcataaatacaaggcaaagtttcttcaatctacatgcaatctaaattcttatg 9747  T
Q  109 agcatatttagctaaataattagcagtttggttggtttcacgcctaacattcnnnnnnnttaaactacgaaaactacctttaatgcttatacaatctcga 208  Q
    | |||||||  ||||||||| |||| ||||||||| ||| |||||||||| |       ||||||||||||||||||| ||||  || ||||||||| ||    
T  9748 atcatatttttctaaataatgagcaatttggttggcttcgcgcctaacatgcgaaaaatttaaactacgaaaactacccttaaaactaatacaatcttga 9847  T
Q  209 ataatagagccaacat 224  Q
    ||||| ||||||||||    
T  9848 ataattgagccaacat 9863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 2366 - 2219
Alignment:
Q  8 gttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaatctagatt 104  Q
    |||||||||||||||| ||| |||| |||||||||| ||||||||  ||||||    ||||||||| |||||||||||||| | |||||||||||| |||    
T  2366 gttaaagacaatttcattaatgaaagtctggcaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatctaaatt 2267  T
Q  105 ctt--gagcatatttagctaaataattagcagtttggttggtttcacgc 151  Q
    |||  ||||||| ||||| ||||||| ||||| |||||||| |||||||    
T  2266 cttaagagcata-ttagcaaaataatgagcagcttggttggcttcacgc 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 9490883 - 9490941
Alignment:
Q  168 ttaaactacgaaaactacctttaatgcttatacaatctcgaataatagagccaacatag 226  Q
    ||||||||||||||||||| ||||  || ||||||||||||||||||||| ||||||||    
T  9490883 ttaaactacgaaaactaccattaaaactaatacaatctcgaataatagagtcaacatag 9490941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 55455646 - 55455768
Alignment:
Q  1 tttttacgttaaagacaatttcaataacgaaaatctggcaatatatcaaatgctaagact---taaatacaagacggagtttcttcgacctatatgcaat 97  Q
    |||| |||||||||||||||| |||||||||| || ||||||| |||||| |  ||||||    ||||| |||  ||| |||||||||||||||||||||    
T  55455646 ttttgacgttaaagacaattttaataacgaaagtccggcaataaatcaaacgtcaagactatagaaatataaggtggaatttcttcgacctatatgcaat 55455745  T
Q  98 ctagattctt--gagcatattta 118  Q
     || ||||||  |||||||||||    
T  55455746 ataaattcttaagagcatattta 55455768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 46513388 - 46513343
Alignment:
Q  113 tatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||    
T  46513388 tatttagctaaataatgagcagcttggttggcttcacgcctaacat 46513343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 31497181 - 31497100
Alignment:
Q  79 tcttcgacctatatgcaatctagattctt--gagcatatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    ||||||| |||||||||||||| ||| |   |||||| |||||||||||||| ||||| ||| || | ||||||||||||||    
T  31497181 tcttcgatctatatgcaatctaaattatgaagagcatgtttagctaaataataagcagcttgattagcttcacgcctaacat 31497100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 43544055 - 43543982
Alignment:
Q  72 cggagtttcttcgacctatatgcaatctagattctt--gagcatatttagctaaataattagcagtttggttgg 143  Q
    |||||||||||||| | |||||||||||| ||||||  ||||| ||||||||||||||| ||||| ||||||||    
T  43544055 cggagtttcttcgatccatatgcaatctaaattcttaagagcaaatttagctaaataatgagcagcttggttgg 43543982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 43542453 - 43542388
Alignment:
Q  168 ttaaactacgaaaactacctttaatgcttatacaatctcgaataatagagccaacatagttgggag 233  Q
    ||||||||||||||||||| || |  || ||||||||| |||||||||||||| ||||||||||||    
T  43542453 ttaaactacgaaaactacccttcaaactaatacaatcttgaataatagagccagcatagttgggag 43542388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 9438412 - 9438460
Alignment:
Q  110 gcatatttagctaaataattagcagtttggttggtttcacgcctaacat 158  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||||    
T  9438412 gcatatttagctaaataataagcagtttggttggcttcatgcctaacat 9438460  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 18746165 - 18746285
Alignment:
Q  17 aatttcaataacgaaaatctggcaatatatcaaatgctaagactt---aaatacaagacggagtttcttcgacctatatgcaatctagattctt--gagc 111  Q
    ||||| ||||| |||| || ||||||| ||||||||| ||||||    ||||||||| |||||||||||||| | ||||| |||||  ||||||  || |    
T  18746165 aatttgaataatgaaagtcgggcaataaatcaaatgc-aagactgcagaaatacaaggcggagtttcttcgatccatatgtaatctgaattcttaagaac 18746263  T
Q  112 atatttagctaaataattagca 133  Q
    ||||||| ||||||||| ||||    
T  18746264 atatttacctaaataatgagca 18746285  T

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