View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_40 (Length: 247)
Name: NF1809_low_40
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 18345036 - 18345254
Alignment:
| Q |
11 |
ataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacatttgtatgtttccggttcaagataaaaaattgtgaa |
110 |
Q |
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| T |
18345036 |
ataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacctttgtatgtttccggttcaagataaaaaattgtgaa |
18345135 |
T |
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| Q |
111 |
ccaacccgaaaatcctcaaatggaacctccggcatcattacattctctccacgagcattatatcgtatattgagattttctgcctctgagagaatctcaa |
210 |
Q |
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| T |
18345136 |
ccaacccgaaaatcctcaaatggaacctccggcatcattacattctctccacgagcattataccgtatattgagattttctgcctctgagagaatctcaa |
18345235 |
T |
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| Q |
211 |
tatagctagggtatagtag |
229 |
Q |
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| T |
18345236 |
tatagctagggtacagtag |
18345254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 18339897 - 18340039
Alignment:
| Q |
30 |
ggaatctgaaacttgttccatagcttttgatctctcaacacaacatttgtatgtttccggttcaagataaaaaattgtgaaccaacccgaaaatcctcaa |
129 |
Q |
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| T |
18339897 |
ggaatccgaaacttcttccatagcttataatctctcaccacaacctttgcatgcttcctattcaagataaaaaactgcgaaccaacccgaaaatcctcaa |
18339996 |
T |
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| Q |
130 |
atggaacctccggcatcattacattctctccacgagcattata |
172 |
Q |
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| T |
18339997 |
atggaacctccggcaacataacattctctccacgagcgttata |
18340039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 18303804 - 18303657
Alignment:
| Q |
25 |
tacatggaatctgaaacttgttccatagcttttgatctctcaacacaacatttgtatgtttccggttcaagataaaaaattgtgaaccaacccgaaaatc |
124 |
Q |
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| T |
18303804 |
tacatggaatccgaaacttcttccacaacttttgatctcgcagaacaacctttgcatgtttccggttcaggataaagaattgcgagcctttgcgaaaatc |
18303705 |
T |
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| Q |
125 |
ctcaaatggaacctccggcatcattacattctctccacgagcattata |
172 |
Q |
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| T |
18303704 |
cttgaatgaaacctccggcatcattacatcctttccacgagcattata |
18303657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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