View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_42 (Length: 239)
Name: NF1809_low_42
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 14777556 - 14777761
Alignment:
| Q |
16 |
aatataggtggcaacttctttttcacacaagccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactt |
115 |
Q |
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| T |
14777556 |
aatataggtggcaacttctttttcacacaagccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactt |
14777655 |
T |
|
| Q |
116 |
tctaaggacacatgtcccttctctaatcgggataattgttattattttaaacaacattcaaacattgcaataatcaacacaaccatatagcatatcctat |
215 |
Q |
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| T |
14777656 |
tctaaggacacgtgtcccttctctaatcgggataattgttattattttaaacaacattcaaacattttaataatcaacacaaccatatagcatatcctat |
14777755 |
T |
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| Q |
216 |
caacca |
221 |
Q |
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|||||| |
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| T |
14777756 |
caacca |
14777761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 34126871 - 34126697
Alignment:
| Q |
47 |
ccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactttctaaggacacatgtcccttctctaatcggg |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34126871 |
ccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactttctaaggacacttgtcccttctctaatcggg |
34126772 |
T |
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| Q |
147 |
ataattgttattattttaaacaacattcaaacattgcaataatcaacacaaccatatagcatatcctatcaacca |
221 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34126771 |
ataattgttattattttaaacaacattcaaacattttaataatcaacacaaccatatagcatatcctatcaacca |
34126697 |
T |
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