View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_50 (Length: 231)
Name: NF1809_low_50
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 16909375 - 16909158
Alignment:
| Q |
1 |
tgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaatgaactctattgaacaatttgaacct |
100 |
Q |
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| T |
16909375 |
tgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaatgaactctattgaacaatttgaacct |
16909276 |
T |
|
| Q |
101 |
catgtgaaagttaaatcgaatagcgaaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttgcaacttccggattggcttagagcac |
200 |
Q |
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| T |
16909275 |
catgccaaagttaaatcgaatagcgtaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttgcaacttccggattggcttagagcac |
16909176 |
T |
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| Q |
201 |
caaatggttatacttatt |
218 |
Q |
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|||||||||||||||||| |
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| T |
16909175 |
caaatggttatacttatt |
16909158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14869293 - 14869510
Alignment:
| Q |
1 |
tgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaatgaactctattgaacaatttgaacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
14869293 |
tgttgatgttgctgatgaattgggaattccaaggttaatttgtattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacct |
14869392 |
T |
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| Q |
101 |
catgtgaaagttaaatcgaatagcgaaagttttctgcttcctgggttgcctcacaacgtggaaatgacgcgtttgcaacttccggattggcttagagcac |
200 |
Q |
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| T |
14869393 |
caggcgaaagttaaattgaatagcgagagttttcttcttcctgggttgcctcacaaggtggaaatgaaacgtttacaacttccggattggcttagagcac |
14869492 |
T |
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| Q |
201 |
caaatggttatacttatt |
218 |
Q |
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| |||| ||| ||||||| |
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| T |
14869493 |
cgaatgattacacttatt |
14869510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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