View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_59 (Length: 213)
Name: NF1809_low_59
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 34003888 - 34004071
Alignment:
| Q |
16 |
attctacattctttaaagtttaattagttttaaaccttaaagttgtatgagtgtatctgatgatcatgtgactgatgctaaatatattgaatgtggatgg |
115 |
Q |
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| T |
34003888 |
attctacattctttaaagttcaattagttttaaaccttaaagttgtatgagtgtatctgatgatcgtgtgactgatgctaaatatatttaatatggatgg |
34003987 |
T |
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| Q |
116 |
ttatagacatctataacccaagagtagcatggatttattagttatatgttaaacaaaatgtaaaatcagtaaagaccaaattaa |
199 |
Q |
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| T |
34003988 |
ttatagacatctataacccaagagtagcatggatttattagtgatatgttaaacaaaatgtaaactcagtaaagaccaaattaa |
34004071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 34159209 - 34159126
Alignment:
| Q |
48 |
aaccttaaagttgtatgagtgtatctgatgatcatgtgactgatgctaaatatattgaatgtggatggttatagacatctataa |
131 |
Q |
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| T |
34159209 |
aaccataaagttatatgagtgtgtctcatgatcatatgactaatgctaaatatattgaatatggatggttatagacatctataa |
34159126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 34158687 - 34158627
Alignment:
| Q |
138 |
agtagcatggatttattagttatatgttaaacaaaatgtaaaatcagtaaagaccaaattaa |
199 |
Q |
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| T |
34158687 |
agtagcatgggtttattagtgatatgttaaa-aaattgtaaaatgaataaagaccaaattaa |
34158627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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