View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_60 (Length: 212)
Name: NF1809_low_60
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 43107058 - 43107240
Alignment:
| Q |
14 |
cagagataatttttggatcaacaatgttccctttaccaatattaggnnnnnnnatgatatgaagcataactttctcaaactcttctccatctctccaacc |
113 |
Q |
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| T |
43107058 |
cagagataatttttggatcaacagtgttccctttaccaatattaggttttttgatgatatgaagcataacattctcaaactcttccccatctctccaacc |
43107157 |
T |
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| Q |
114 |
atgtagatgtgcctttatgtctttagaatttttagagacaaaatcaaacaattgaaagttcatctaggcatgagataatcaat |
196 |
Q |
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| T |
43107158 |
atgtacatgtgcctttatgtctttagaatttttagagacaaaatcaaacaattgaaagttcatctaggcatgagataatcaat |
43107240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 43103837 - 43104016
Alignment:
| Q |
16 |
gagataatttttggatcaacaatgttccctttaccaatattaggnnnnnnnatgatatgaagcataactttctcaaactcttctccatctctccaaccat |
115 |
Q |
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| T |
43103837 |
gagataatttttggaccaacaatgttccctttaccaatattagctttgttgataatatgaagcagaacattctcaagctcctctccatctctccaaccat |
43103936 |
T |
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| Q |
116 |
gtagatgtgcctttatgtctttagaatttttagagacaaaatcaaacaattgaaagttca-tctaggcatgagataatca |
194 |
Q |
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| T |
43103937 |
gtacatgtgccttaatgtcatttgaatttttagatactaaatcactcaatgcaaagttcattctaggcatcaaataatca |
43104016 |
T |
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