View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_8 (Length: 460)
Name: NF1809_low_8
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 46734746 - 46735183
Alignment:
| Q |
17 |
aatctttacattgcggcttcaggttgcaatttaaagctatataacaagttaatttcctatttagttacgctgtttgcataaaacaaaaa----ctcaagt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
46734746 |
aatctttacattgcggcttcaggttgcaatttaaagctatataacaagttaatttcctatttagttacgctgcttgcataaaaaaaaaaaaaactcaagt |
46734845 |
T |
|
| Q |
113 |
catactctagcttgctcttgaatannnnnnnnnnnnagatttctcactgaattgttatgtttaattttctagtgaaagtgttggactggggtgaggatgg |
212 |
Q |
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|||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734846 |
catagtctaacttgctcttgaatattttttgtttttagatttctcactgaattgttatgtttaattttctagtgaaagtgttggactggggtgaggatgg |
46734945 |
T |
|
| Q |
213 |
tgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734946 |
tgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataa |
46735045 |
T |
|
| Q |
313 |
acttaatatccttcacactctcatttatttaaattcataattactaataaacttttgtatgcttatttttctcctttcctttatgatgtggaactatagg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735046 |
acttaatatccttcacactctcatttatttaaattcatgattactaataaacttttgtatgcttatttttctcctttcctttatgatgtggaactatagg |
46735145 |
T |
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| Q |
413 |
a-ttttattttttaaagcgtagttttgtaattgttcat |
449 |
Q |
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| T |
46735146 |
atttttattttttaaagcgtagttttgtaattgttcat |
46735183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 240 - 449
Target Start/End: Complemental strand, 19411404 - 19411190
Alignment:
| Q |
240 |
tttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataaacttaatatccttcacactctcattta |
339 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19411404 |
tttacgagcatcatttcggcaggaggttactgtgtagcaaaaacttgatcattcaaatgtcacaaaagtacaaacttaatatccttcacactctcattta |
19411305 |
T |
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| Q |
340 |
tttaaattcataattacta-ataaact--tttgtatgcttatttttctcctttcctttatgatgtggaactatagga-ttttat-tttttaaagcgtagt |
434 |
Q |
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||||||||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||| || |||| |
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| T |
19411304 |
tttaaattcatgattactacttaaaataatttgtattcttatttttctcctttcctttatgaggtggagctgtaggatttttatatttttaacgcatagt |
19411205 |
T |
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| Q |
435 |
tttgtaattgttcat |
449 |
Q |
| |
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||| ||||||||||| |
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| T |
19411204 |
tttataattgttcat |
19411190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 984366 - 984492
Alignment:
| Q |
183 |
agtgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaa |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| | || ||||| ||| |
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| T |
984366 |
agtgaaagtgttggattggggtgaggatggtgctgccaccgctgcagaaactgctgctttacgtgcatcttttaggcaggaggttgccgtctggcacaaa |
984465 |
T |
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| Q |
283 |
cttgatcattcaaatgtcacaaaagta |
309 |
Q |
| |
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|| || ||| |||||||||| |||||| |
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| T |
984466 |
ctcgaccatccaaatgtcactaaagta |
984492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 37222641 - 37222765
Alignment:
| Q |
185 |
tgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaact |
284 |
Q |
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||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||| ||| ||||||||||| | || ||| | ||||| |
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| T |
37222641 |
tgaaagtgttggattggggtgaggatggtgctgccaccgctgcggaaactgccgctttacgtgcatcctttaggcaggaggttgccgtctggtacaaact |
37222740 |
T |
|
| Q |
285 |
tgatcattcaaatgtcacaaaagta |
309 |
Q |
| |
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|| ||| |||||| ||| |||||| |
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| T |
37222741 |
cgaccatccaaatgccacgaaagta |
37222765 |
T |
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Back To:
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