View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809_low_9 (Length: 453)
Name: NF1809_low_9
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 43920391 - 43919970
Alignment:
| Q |
19 |
gtattaccgcggtgccgcagcagcaattgttgtttatgacatctctagcattgtaagtattcattttgttatatttgaaaacgatcgacaatgttgttta |
118 |
Q |
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| T |
43920391 |
gtattaccgcggtgccgcagcagcaattgttgtttatgacatctctagcattgtaagtattcattttgttatatttgaaaacgatcaacaatgttgttta |
43920292 |
T |
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| Q |
119 |
tgatccaaatttctatttcaggacacatttgttcgagcgaaaaaatgggttcaagaattgcaaagacatggtaatacctcaaacacaggaaatttaaaac |
218 |
Q |
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| T |
43920291 |
tgatccaaatttctatttcaggacacatttgttcgagcgaaaaaatgggttcaggaattgcaaagacatggtaatacctcaaacacaggaaatttaaaac |
43920192 |
T |
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| Q |
219 |
tgtgatagcaattcatgtgcattagtaacatgttttgtttcgatcttttatcagtatttttgtaaagcttatatatatttgagtataactatataaccac |
318 |
Q |
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| T |
43920191 |
tgtgatagcaattcatgtgcattagtaacatgttttgtttcgatcttttatcagtatttttgtaaagcttatatctatttgagtataactatataaccac |
43920092 |
T |
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| Q |
319 |
atgttgtaggaagtcagaagttggtgatggcattggtagcaaacaaatgtgacttggagccaaagagagaagttgaaactgaggttgtgtttaaatcttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920091 |
atgttgtaggaagtcagaagttggtgatggcattggtagcaaacaaatgtgacttggagccaaagagagaagttgaaactgaggttgtgtttaaatcttc |
43919992 |
T |
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| Q |
419 |
ttcacacccttttcccttgttc |
440 |
Q |
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| T |
43919991 |
ttcacacccttttcccttgttc |
43919970 |
T |
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