View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18100_high_11 (Length: 237)
Name: NF18100_high_11
Description: NF18100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18100_high_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 41296533 - 41296752
Alignment:
| Q |
18 |
atttctttctcgtacggttttgtttcaagctggacactaccatgttacatacgcgtcctaagtaacaactataaatagagcatgtccttaatgctcttct |
117 |
Q |
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| T |
41296533 |
atttctttctcgtacggttttgtttcaagctggacactaccatgttacatacgcgtcctaagtaacaactataaatagagcatgtccttaatgctcttct |
41296632 |
T |
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| Q |
118 |
ctcaaaacaaaaatattacattacatctcttcttctaagtagagaccaaacaacatatttaacatgtcagagacacttcgtttggctgttgctgttcttg |
217 |
Q |
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| T |
41296633 |
ctcaaaacaaaaatattacattacatctcttcttctaagtagagactaaacaacaaatttaacatgtcagagacacttcgtttggctgttgctgttcttg |
41296732 |
T |
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| Q |
218 |
gtatttcttcgttcgttcat |
237 |
Q |
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| T |
41296733 |
gtatttcttcgttcgttcat |
41296752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 41306308 - 41306511
Alignment:
| Q |
37 |
ttgtttcaagctggacactaccatgttac----atacgcgtcctaagtaacaactataaatagagcatgtccttaatgctcttctct------caaaaca |
126 |
Q |
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| T |
41306308 |
ttgtttcaagctggacactactatgttaattaaatacgcgtcctacataacgactataaatagagcatgtcctcaatgttcttcttcgtggtacaataca |
41306407 |
T |
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| Q |
127 |
aaaatattacattacatctcttcttctaagtagagaccaaacaacatatttaacatgtcagagacacttcgtttggctgttgctgttcttggtatttctt |
226 |
Q |
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| T |
41306408 |
aaa-tattat----catttcttcttctaagtagagagtaaaaaacaaattaaagatgtcaaatacacttcgtctggctgttgctgttcttggtattattt |
41306502 |
T |
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| Q |
227 |
cgttcgttc |
235 |
Q |
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| T |
41306503 |
cgtttgttc |
41306511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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